Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
VCANP13611 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.5■□□□□ 0.71
VCANP13611 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VCANP13611 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VCANP13611 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VCANP13611 AC005336.2-201ENST00000593183 939 ntBASIC19.5■□□□□ 0.71
VCANP13611 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.5■□□□□ 0.71
VCANP13611 MTDHP5-201ENST00000598980 586 ntBASIC19.5■□□□□ 0.71
VCANP13611 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VCANP13611 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.5■□□□□ 0.71
VCANP13611 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VCANP13611 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
VCANP13611 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
VCANP13611 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VCANP13611 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.5■□□□□ 0.71
VCANP13611 RPS2P28-201ENST00000314255 741 ntBASIC19.5■□□□□ 0.71
VCANP13611 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VCANP13611 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC19.5■□□□□ 0.71
VCANP13611 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19.5■□□□□ 0.71
VCANP13611 AC008608.2-201ENST00000606089 416 ntBASIC19.5■□□□□ 0.71
VCANP13611 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC19.5■□□□□ 0.71
VCANP13611 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VCANP13611 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VCANP13611 RPL28-205ENST00000558131 444 ntTSL 5 BASIC19.49■□□□□ 0.71
VCANP13611 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.49■□□□□ 0.71
VCANP13611 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC19.49■□□□□ 0.71
VCANP13611 AL160286.2-201ENST00000567150 934 ntBASIC19.49■□□□□ 0.71
VCANP13611 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.49■□□□□ 0.71
VCANP13611 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VCANP13611 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.49■□□□□ 0.71
VCANP13611 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VCANP13611 FEM1AP1-201ENST00000431297 1995 ntBASIC19.49■□□□□ 0.71
VCANP13611 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.49■□□□□ 0.71
VCANP13611 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VCANP13611 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VCANP13611 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
VCANP13611 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
VCANP13611 Z83851.2-201ENST00000609564 659 ntBASIC19.49■□□□□ 0.71
VCANP13611 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
VCANP13611 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
VCANP13611 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VCANP13611 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
VCANP13611 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VCANP13611 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.49■□□□□ 0.71
VCANP13611 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
VCANP13611 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VCANP13611 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VCANP13611 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VCANP13611 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
VCANP13611 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC19.48■□□□□ 0.71
VCANP13611 DPP3P2-201ENST00000416030 1696 ntBASIC19.48■□□□□ 0.71
VCANP13611 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VCANP13611 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC19.48■□□□□ 0.71
VCANP13611 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC19.48■□□□□ 0.71
VCANP13611 MIR3917-201ENST00000580971 93 ntBASIC19.48■□□□□ 0.71
VCANP13611 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
VCANP13611 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
VCANP13611 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VCANP13611 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VCANP13611 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
VCANP13611 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VCANP13611 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VCANP13611 AC096582.2-201ENST00000510860 516 ntBASIC19.48■□□□□ 0.71
VCANP13611 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC19.48■□□□□ 0.71
VCANP13611 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC19.48■□□□□ 0.71
VCANP13611 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VCANP13611 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VCANP13611 AC132008.2-207ENST00000454517 770 ntBASIC19.47■□□□□ 0.71
VCANP13611 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.47■□□□□ 0.71
VCANP13611 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
VCANP13611 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC19.47■□□□□ 0.71
VCANP13611 AC079834.2-201ENST00000609776 1949 ntBASIC19.47■□□□□ 0.71
VCANP13611 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VCANP13611 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VCANP13611 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
VCANP13611 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VCANP13611 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VCANP13611 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VCANP13611 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC19.47■□□□□ 0.71
VCANP13611 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC19.47■□□□□ 0.71
VCANP13611 AP002472.1-201ENST00000577490 586 ntBASIC19.47■□□□□ 0.71
VCANP13611 AC063926.2-201ENST00000623766 1308 ntBASIC19.47■□□□□ 0.71
VCANP13611 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.47■□□□□ 0.71
VCANP13611 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VCANP13611 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VCANP13611 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC19.47■□□□□ 0.71
VCANP13611 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC19.47■□□□□ 0.71
VCANP13611 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.47■□□□□ 0.71
VCANP13611 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
VCANP13611 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.47■□□□□ 0.71
VCANP13611 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VCANP13611 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.47■□□□□ 0.71
VCANP13611 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VCANP13611 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VCANP13611 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VCANP13611 BAD-202ENST00000394531 631 ntTSL 3 BASIC19.46■□□□□ 0.71
VCANP13611 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.46■□□□□ 0.71
VCANP13611 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC19.46■□□□□ 0.71
VCANP13611 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VCANP13611 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms