Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC16.05■□□□□ 0.16
SDCBPO00560 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
SDCBPO00560 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
SDCBPO00560 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.05■□□□□ 0.16
SDCBPO00560 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.05■□□□□ 0.16
SDCBPO00560 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC16.05■□□□□ 0.16
SDCBPO00560 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SDCBPO00560 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SDCBPO00560 NOC2LP1-202ENST00000452600 2235 ntBASIC16.05■□□□□ 0.16
SDCBPO00560 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
SDCBPO00560 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SDCBPO00560 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SDCBPO00560 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SDCBPO00560 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SDCBPO00560 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SDCBPO00560 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC16.05■□□□□ 0.16
SDCBPO00560 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
SDCBPO00560 KLF13-207ENST00000560473 489 ntTSL 3 BASIC16.05■□□□□ 0.16
SDCBPO00560 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SDCBPO00560 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
SDCBPO00560 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC16.05■□□□□ 0.16
SDCBPO00560 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SDCBPO00560 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.05■□□□□ 0.16
SDCBPO00560 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.05■□□□□ 0.16
SDCBPO00560 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
SDCBPO00560 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
SDCBPO00560 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.05■□□□□ 0.16
SDCBPO00560 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
SDCBPO00560 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
SDCBPO00560 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC16.04■□□□□ 0.16
SDCBPO00560 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SDCBPO00560 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SDCBPO00560 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
SDCBPO00560 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SDCBPO00560 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
SDCBPO00560 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
SDCBPO00560 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SDCBPO00560 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
SDCBPO00560 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC16.04■□□□□ 0.16
SDCBPO00560 UBQLN4P1-201ENST00000461599 1801 ntBASIC16.04■□□□□ 0.16
SDCBPO00560 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SDCBPO00560 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SDCBPO00560 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SDCBPO00560 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
SDCBPO00560 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC16.04■□□□□ 0.16
SDCBPO00560 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC16.04■□□□□ 0.16
SDCBPO00560 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC16.04■□□□□ 0.16
SDCBPO00560 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC16.04■□□□□ 0.16
SDCBPO00560 UNC93B5-201ENST00000530315 699 ntBASIC16.04■□□□□ 0.16
SDCBPO00560 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SDCBPO00560 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
SDCBPO00560 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC16.04■□□□□ 0.16
SDCBPO00560 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
SDCBPO00560 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SDCBPO00560 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC16.04■□□□□ 0.16
SDCBPO00560 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SDCBPO00560 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SDCBPO00560 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SDCBPO00560 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
SDCBPO00560 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SDCBPO00560 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SDCBPO00560 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
SDCBPO00560 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SDCBPO00560 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC16.03■□□□□ 0.16
SDCBPO00560 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SDCBPO00560 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SDCBPO00560 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
SDCBPO00560 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.03■□□□□ 0.16
SDCBPO00560 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SDCBPO00560 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SDCBPO00560 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC16.03■□□□□ 0.16
SDCBPO00560 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SDCBPO00560 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC16.03■□□□□ 0.16
SDCBPO00560 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SDCBPO00560 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SDCBPO00560 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC16.03■□□□□ 0.16
SDCBPO00560 POM121L13P-201ENST00000422362 380 ntBASIC16.03■□□□□ 0.16
SDCBPO00560 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC16.03■□□□□ 0.16
SDCBPO00560 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC16.03■□□□□ 0.16
SDCBPO00560 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC16.03■□□□□ 0.16
SDCBPO00560 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC16.03■□□□□ 0.16
SDCBPO00560 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC16.03■□□□□ 0.16
SDCBPO00560 PRKY-204ENST00000533551 1019 ntBASIC16.03■□□□□ 0.16
SDCBPO00560 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SDCBPO00560 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC16.03■□□□□ 0.16
SDCBPO00560 KLF2-202ENST00000592003 564 ntTSL 3 BASIC16.03■□□□□ 0.16
SDCBPO00560 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SDCBPO00560 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
SDCBPO00560 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
SDCBPO00560 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SDCBPO00560 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC16.03■□□□□ 0.16
SDCBPO00560 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SDCBPO00560 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SDCBPO00560 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SDCBPO00560 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SDCBPO00560 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SDCBPO00560 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SDCBPO00560 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SDCBPO00560 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC16.03■□□□□ 0.16
SDCBPO00560 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms