Protein–RNA interactions for Protein: O00148

DDX39A, ATP-dependent RNA helicase DDX39A, humanhuman

Known RBP Predictions only

Length 427 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39AO00148 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
DDX39AO00148 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX39AO00148 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC21.22■□□□□ 0.99
DDX39AO00148 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
DDX39AO00148 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX39AO00148 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC21.22■□□□□ 0.99
DDX39AO00148 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX39AO00148 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX39AO00148 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX39AO00148 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX39AO00148 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX39AO00148 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX39AO00148 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX39AO00148 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
DDX39AO00148 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
DDX39AO00148 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
DDX39AO00148 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX39AO00148 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
DDX39AO00148 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC21.22■□□□□ 0.99
DDX39AO00148 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC21.22■□□□□ 0.99
DDX39AO00148 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
DDX39AO00148 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX39AO00148 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX39AO00148 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
DDX39AO00148 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX39AO00148 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX39AO00148 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
DDX39AO00148 RCC2P3-201ENST00000418112 1537 ntBASIC21.21■□□□□ 0.99
DDX39AO00148 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC21.21■□□□□ 0.99
DDX39AO00148 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
DDX39AO00148 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
DDX39AO00148 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
DDX39AO00148 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC21.21■□□□□ 0.99
DDX39AO00148 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
DDX39AO00148 MCCD1P1-208ENST00000445732 328 ntBASIC21.21■□□□□ 0.99
DDX39AO00148 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC21.21■□□□□ 0.99
DDX39AO00148 AL441883.1-201ENST00000566170 1045 ntBASIC21.21■□□□□ 0.99
DDX39AO00148 AC140113.3-201ENST00000605663 199 ntBASIC21.21■□□□□ 0.99
DDX39AO00148 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC21.21■□□□□ 0.99
DDX39AO00148 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX39AO00148 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX39AO00148 AL161938.1-201ENST00000569833 2180 ntBASIC21.21■□□□□ 0.99
DDX39AO00148 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC21.21■□□□□ 0.99
DDX39AO00148 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
DDX39AO00148 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX39AO00148 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX39AO00148 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX39AO00148 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
DDX39AO00148 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
DDX39AO00148 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
DDX39AO00148 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC21.2■□□□□ 0.98
DDX39AO00148 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC21.2■□□□□ 0.98
DDX39AO00148 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC21.2■□□□□ 0.98
DDX39AO00148 AL512353.2-201ENST00000448759 1962 ntBASIC21.2■□□□□ 0.98
DDX39AO00148 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX39AO00148 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX39AO00148 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX39AO00148 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX39AO00148 AC022616.7-201ENST00000525383 220 ntBASIC21.2■□□□□ 0.98
DDX39AO00148 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
DDX39AO00148 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC21.2■□□□□ 0.98
DDX39AO00148 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX39AO00148 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC21.2■□□□□ 0.98
DDX39AO00148 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
DDX39AO00148 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
DDX39AO00148 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX39AO00148 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX39AO00148 PTGES2-AS1-201ENST00000443493 2100 ntBASIC21.19■□□□□ 0.98
DDX39AO00148 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX39AO00148 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX39AO00148 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC21.19■□□□□ 0.98
DDX39AO00148 ILF2-202ENST00000368681 726 ntTSL 2 BASIC21.19■□□□□ 0.98
DDX39AO00148 RNF152P1-201ENST00000397754 604 ntBASIC21.19■□□□□ 0.98
DDX39AO00148 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC21.19■□□□□ 0.98
DDX39AO00148 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC21.19■□□□□ 0.98
DDX39AO00148 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC21.19■□□□□ 0.98
DDX39AO00148 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC21.19■□□□□ 0.98
DDX39AO00148 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX39AO00148 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC21.19■□□□□ 0.98
DDX39AO00148 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX39AO00148 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX39AO00148 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
DDX39AO00148 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX39AO00148 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
DDX39AO00148 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.18■□□□□ 0.98
DDX39AO00148 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX39AO00148 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
DDX39AO00148 GUK1-204ENST00000366721 689 ntTSL 3 BASIC21.18■□□□□ 0.98
DDX39AO00148 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC21.18■□□□□ 0.98
DDX39AO00148 TSPY5P-201ENST00000426936 936 ntBASIC21.18■□□□□ 0.98
DDX39AO00148 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX39AO00148 AC063952.2-201ENST00000498792 1227 ntBASIC21.18■□□□□ 0.98
DDX39AO00148 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC21.18■□□□□ 0.98
DDX39AO00148 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
DDX39AO00148 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
DDX39AO00148 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX39AO00148 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
DDX39AO00148 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
DDX39AO00148 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX39AO00148 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms