Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CPSF4LA6NMK7 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CPSF4LA6NMK7 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CPSF4LA6NMK7 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CPSF4LA6NMK7 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
CPSF4LA6NMK7 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CPSF4LA6NMK7 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.42■□□□□ 0.38
CPSF4LA6NMK7 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 MMAB-206ENST00000540016 945 ntTSL 3 BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 KRT8P41-201ENST00000533985 1514 ntBASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CPSF4LA6NMK7 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 LY6E-205ENST00000519611 635 ntTSL 3 BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 KRT18P6-201ENST00000555540 1265 ntBASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CPSF4LA6NMK7 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms