Protein–RNA interactions for Protein: P16070

CD44, CD44 antigen, humanhuman

Known RBP Predictions only

Length 742 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD44P16070 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.74□□□□□ -1.81
CD44P16070 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CD44P16070 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.73□□□□□ -1.81
CD44P16070 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.73□□□□□ -1.81
CD44P16070 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.73□□□□□ -1.81
CD44P16070 MIR424-201ENST00000362227 98 ntBASIC3.73□□□□□ -1.81
CD44P16070 SNORA57.1-201ENST00000391227 145 ntBASIC3.73□□□□□ -1.81
CD44P16070 AC093578.1-201ENST00000415219 368 ntBASIC3.73□□□□□ -1.81
CD44P16070 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC3.73□□□□□ -1.81
CD44P16070 HMGN1P18-201ENST00000457642 277 ntBASIC3.73□□□□□ -1.81
CD44P16070 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.73□□□□□ -1.81
CD44P16070 MIR548H5-201ENST00000580314 60 ntBASIC3.73□□□□□ -1.81
CD44P16070 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
CD44P16070 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
CD44P16070 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.73□□□□□ -1.81
CD44P16070 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CD44P16070 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CD44P16070 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CD44P16070 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CD44P16070 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CD44P16070 RNA5SP215-201ENST00000363440 122 ntBASIC3.72□□□□□ -1.81
CD44P16070 SNORA73.2-201ENST00000364946 201 ntBASIC3.72□□□□□ -1.81
CD44P16070 RPL23AP83-201ENST00000434984 473 ntBASIC3.72□□□□□ -1.81
CD44P16070 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.72□□□□□ -1.81
CD44P16070 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.72□□□□□ -1.81
CD44P16070 RNA5SP119-201ENST00000362715 117 ntBASIC3.71□□□□□ -1.82
CD44P16070 RNU6-645P-201ENST00000364649 106 ntBASIC3.71□□□□□ -1.82
CD44P16070 MT-TF-201ENST00000387314 71 ntBASIC3.71□□□□□ -1.82
CD44P16070 Y_RNA.588-201ENST00000391254 102 ntBASIC3.71□□□□□ -1.82
CD44P16070 RNU1-143P-201ENST00000516296 146 ntBASIC3.71□□□□□ -1.82
CD44P16070 RNU6-980P-201ENST00000516925 103 ntBASIC3.71□□□□□ -1.82
CD44P16070 AC103810.8-201ENST00000607347 118 ntBASIC3.71□□□□□ -1.82
CD44P16070 U1.23-201ENST00000610293 146 ntBASIC3.71□□□□□ -1.82
CD44P16070 RNU1-68P-201ENST00000615382 146 ntBASIC3.71□□□□□ -1.82
CD44P16070 U1.39-201ENST00000621562 146 ntBASIC3.71□□□□□ -1.82
CD44P16070 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CD44P16070 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
CD44P16070 MIR101-2-201ENST00000362195 79 ntBASIC3.7□□□□□ -1.82
CD44P16070 RNA5SP139-201ENST00000364340 117 ntBASIC3.7□□□□□ -1.82
CD44P16070 AL359837.1-201ENST00000381357 287 ntBASIC3.7□□□□□ -1.82
CD44P16070 U3.27-201ENST00000391237 200 ntBASIC3.7□□□□□ -1.82
CD44P16070 RNU6-1054P-201ENST00000411293 104 ntBASIC3.7□□□□□ -1.82
CD44P16070 HMGN2P7-201ENST00000456186 273 ntBASIC3.7□□□□□ -1.82
CD44P16070 RNA5SP437-201ENST00000517249 129 ntBASIC3.7□□□□□ -1.82
CD44P16070 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
CD44P16070 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.7□□□□□ -1.82
CD44P16070 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CD44P16070 RNU6-930P-201ENST00000390938 100 ntBASIC3.69□□□□□ -1.82
CD44P16070 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC3.69□□□□□ -1.82
CD44P16070 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
CD44P16070 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
CD44P16070 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CD44P16070 AC016717.2-201ENST00000609089 5141 ntBASIC3.68□□□□□ -1.82
CD44P16070 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CD44P16070 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CD44P16070 SNORD56.3-201ENST00000363507 71 ntBASIC3.68□□□□□ -1.82
CD44P16070 MIR520A-201ENST00000384862 85 ntBASIC3.68□□□□□ -1.82
CD44P16070 SUMO2P12-201ENST00000405924 140 ntBASIC3.68□□□□□ -1.82
CD44P16070 SNORD75.2-201ENST00000408784 58 ntBASIC3.68□□□□□ -1.82
CD44P16070 RNA5SP229-201ENST00000410809 99 ntBASIC3.68□□□□□ -1.82
CD44P16070 RPL23AP42-201ENST00000471152 471 ntBASIC3.68□□□□□ -1.82
CD44P16070 AC008885.1-201ENST00000514930 301 ntBASIC3.68□□□□□ -1.82
CD44P16070 RNU6-711P-201ENST00000517255 106 ntBASIC3.68□□□□□ -1.82
CD44P16070 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.68□□□□□ -1.82
CD44P16070 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.68□□□□□ -1.82
CD44P16070 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CD44P16070 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.68□□□□□ -1.82
CD44P16070 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CD44P16070 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CD44P16070 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CD44P16070 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CD44P16070 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
CD44P16070 SNORA25.3-201ENST00000363205 127 ntBASIC3.67□□□□□ -1.82
CD44P16070 RNU6-1039P-201ENST00000383931 107 ntBASIC3.67□□□□□ -1.82
CD44P16070 RN7SL542P-201ENST00000467147 294 ntBASIC3.67□□□□□ -1.82
CD44P16070 SNORA64.4-201ENST00000516632 81 ntBASIC3.67□□□□□ -1.82
CD44P16070 AC026271.5-201ENST00000577873 130 ntBASIC3.67□□□□□ -1.82
CD44P16070 MIR4264-201ENST00000583520 66 ntBASIC3.67□□□□□ -1.82
CD44P16070 MIR7851-201ENST00000610611 160 ntBASIC3.67□□□□□ -1.82
CD44P16070 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.66□□□□□ -1.82
CD44P16070 RNA5SP48-201ENST00000363969 126 ntBASIC3.66□□□□□ -1.82
CD44P16070 RNU6-520P-201ENST00000384717 104 ntBASIC3.66□□□□□ -1.82
CD44P16070 snoU13.27-201ENST00000459278 104 ntBASIC3.66□□□□□ -1.82
CD44P16070 AC015688.6-201ENST00000577737 104 ntBASIC3.66□□□□□ -1.82
CD44P16070 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CD44P16070 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CD44P16070 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.66□□□□□ -1.82
CD44P16070 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CD44P16070 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.82
CD44P16070 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CD44P16070 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
CD44P16070 RNU6-302P-201ENST00000365249 107 ntBASIC3.65□□□□□ -1.83
CD44P16070 RNA5SP293-201ENST00000410527 113 ntBASIC3.65□□□□□ -1.83
CD44P16070 BX510359.4-201ENST00000423750 193 ntBASIC3.65□□□□□ -1.83
CD44P16070 MIR514B-201ENST00000516774 80 ntBASIC3.65□□□□□ -1.83
CD44P16070 uc_338.1-201ENST00000612113 180 ntBASIC3.65□□□□□ -1.83
CD44P16070 MIR6509-201ENST00000614603 85 ntBASIC3.65□□□□□ -1.83
CD44P16070 AC073476.4-201ENST00000628409 72 ntBASIC3.65□□□□□ -1.83
CD44P16070 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.83
CD44P16070 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms