RNA–Protein interactions for RNA: ENST00000284049.7

CHD1-201, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHD1, Length 6,457 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-201ENST00000284049 CHIC1Q5VXU3 224 aa7□□□□□ -1.29
CHD1-201ENST00000284049 AEBP2Q6ZN18 517 aaPredicted RBP6.57□□□□□ -1.36
CHD1-201ENST00000284049 EHMT2Q96KQ7 1210 aa6.16□□□□□ -1.42
CHD1-201ENST00000284049 PHF23Q9BUL5 403 aaPredicted RBP6.06□□□□□ -1.44
CHD1-201ENST00000284049 PLPPR3Q6T4P5 718 aa6.05□□□□□ -1.44
CHD1-201ENST00000284049 SLC24A1O60721 1099 aa5.86□□□□□ -1.47
CHD1-201ENST00000284049 SENP3Q9H4L4 574 aaPredicted RBP5.76□□□□□ -1.49
CHD1-201ENST00000284049 KCNA4P22459 653 aa5.72□□□□□ -1.49
CHD1-201ENST00000284049 SLC4A1APQ9BWU0 796 aaKnown RBP5.67□□□□□ -1.5
CHD1-201ENST00000284049 CSRNP3Q8WYN3 585 aa5.57□□□□□ -1.52
CHD1-201ENST00000284049 AMER1Q5JTC6 1135 aaPredicted RBP5.56□□□□□ -1.52
CHD1-201ENST00000284049 NCBP3Q53F19 620 aaKnown RBP5.51□□□□□ -1.53
CHD1-201ENST00000284049 ADRA2BP18089 450 aa5.49□□□□□ -1.53
CHD1-201ENST00000284049 RTN4Q9NQC3 1192 aaKnown RBP5.49□□□□□ -1.53
CHD1-201ENST00000284049 PPP4R3CPQ6ZMV5 832 aa5.35□□□□□ -1.55
CHD1-201ENST00000284049 PPP6R1Q9UPN7 881 aa5.31□□□□□ -1.56
CHD1-201ENST00000284049 DCAF8L2P0C7V8 631 aa5.26□□□□□ -1.57
CHD1-201ENST00000284049 FKBP8Q14318 412 aa5.22□□□□□ -1.57
CHD1-201ENST00000284049 SCAF1Q9H7N4 1312 aaKnown RBP5.2□□□□□ -1.58
CHD1-201ENST00000284049 NPM3O75607 178 aaKnown RBP5.19□□□□□ -1.58
CHD1-201ENST00000284049 FOXD4L1Q9NU39 408 aa5.19□□□□□ -1.58
CHD1-201ENST00000284049 BCANQ96GW7 911 aa5.17□□□□□ -1.58
CHD1-201ENST00000284049 PIAS4Q8N2W9 510 aaPredicted RBP5.17□□□□□ -1.58
CHD1-201ENST00000284049 FOXD1Q16676 465 aa5.17□□□□□ -1.58
CHD1-201ENST00000284049 HAP1P54257 671 aaPredicted RBP5.14□□□□□ -1.59
CHD1-201ENST00000284049 CNKSR2Q8WXI2 1034 aa5.08□□□□□ -1.6
CHD1-201ENST00000284049 ZBTB22O15209 634 aa5.07□□□□□ -1.6
CHD1-201ENST00000284049 NISCHQ9Y2I1 1504 aa5.04□□□□□ -1.6
CHD1-201ENST00000284049 PRKCSHP14314 528 aaPredicted RBP5.04□□□□□ -1.6
CHD1-201ENST00000284049 PLCB2Q00722 1185 aa5.04□□□□□ -1.6
CHD1-201ENST00000284049 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.03□□□□□ -1.6
CHD1-201ENST00000284049 TPRNQ4KMQ1 711 aa5.03□□□□□ -1.6
CHD1-201ENST00000284049 ERICH6Q7L0X2 663 aa5.02□□□□□ -1.61
CHD1-201ENST00000284049 TAOK2Q9UL54 1235 aa5□□□□□ -1.61
CHD1-201ENST00000284049 RANGAP1P46060 587 aaPredicted RBP4.99□□□□□ -1.61
CHD1-201ENST00000284049 DAXXQ9UER7 740 aaPredicted RBP4.97□□□□□ -1.61
CHD1-201ENST00000284049 FBXO3Q9UK99 471 aa4.96□□□□□ -1.61
CHD1-201ENST00000284049 NBR1Q14596 966 aa4.96□□□□□ -1.62
CHD1-201ENST00000284049 VSIG10Q8N0Z9 540 aa4.94□□□□□ -1.62
CHD1-201ENST00000284049 TULP1O00294 542 aaPredicted RBP4.93□□□□□ -1.62
CHD1-201ENST00000284049 CFAP44Q96MT7 982 aa4.9□□□□□ -1.62
CHD1-201ENST00000284049 MYCNP04198 464 aaPredicted RBP4.9□□□□□ -1.63
CHD1-201ENST00000284049 KLHL34Q8N239 644 aa4.88□□□□□ -1.63
CHD1-201ENST00000284049 ARXQ96QS3 562 aa4.88□□□□□ -1.63
CHD1-201ENST00000284049 ATXN8OSP0DMR3 200 aa4.88□□□□□ -1.63
CHD1-201ENST00000284049 HOMEZQ8IX15 550 aa4.87□□□□□ -1.63
CHD1-201ENST00000284049 PAXIP1Q6ZW49 1069 aaPredicted RBP4.86□□□□□ -1.63
CHD1-201ENST00000284049 C14orf37Q86TY3 774 aa4.83□□□□□ -1.64
CHD1-201ENST00000284049 SPRYD3Q8NCJ5 442 aa4.81□□□□□ -1.64
CHD1-201ENST00000284049 GTF3C3Q9Y5Q9 886 aa4.8□□□□□ -1.64
CHD1-201ENST00000284049 DCAF8L1A6NGE4 600 aa4.78□□□□□ -1.64
CHD1-201ENST00000284049 RNF216Q9NWF9 866 aaPredicted RBP4.78□□□□□ -1.64
CHD1-201ENST00000284049 TIMELESSQ9UNS1 1208 aa4.77□□□□□ -1.65
CHD1-201ENST00000284049 VASPP50552 380 aaPredicted RBP4.77□□□□□ -1.65
CHD1-201ENST00000284049 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.77□□□□□ -1.65
CHD1-201ENST00000284049 HNRNPUL2Q1KMD3 747 aaKnown RBP4.77□□□□□ -1.65
CHD1-201ENST00000284049 ECM2O94769 699 aaPredicted RBP4.76□□□□□ -1.65
CHD1-201ENST00000284049 PODXL2Q9NZ53 605 aa4.75□□□□□ -1.65
CHD1-201ENST00000284049 MAPK8IP2Q13387 824 aaPredicted RBP4.75□□□□□ -1.65
CHD1-201ENST00000284049 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.75□□□□□ -1.653e-6■□□□□ 11.3
CHD1-201ENST00000284049 SAMD1Q6SPF0 538 aaPredicted RBP4.73□□□□□ -1.65
CHD1-201ENST00000284049 CHGAP10645 457 aaKnown RBP4.72□□□□□ -1.65
CHD1-201ENST00000284049 BBXQ8WY36 941 aaPredicted RBP4.72□□□□□ -1.65
CHD1-201ENST00000284049 PLCD3Q8N3E9 789 aa4.71□□□□□ -1.66
CHD1-201ENST00000284049 FBLN2P98095 1184 aa4.7□□□□□ -1.66
CHD1-201ENST00000284049 SPDYE4A6NLX3 237 aa4.7□□□□□ -1.66
CHD1-201ENST00000284049 DNAJC5BQ9UF47 199 aa4.7□□□□□ -1.66
CHD1-201ENST00000284049 TSHZ2Q9NRE2 1034 aa4.7□□□□□ -1.66
CHD1-201ENST00000284049 MSH5O43196 834 aa4.69□□□□□ -1.66
CHD1-201ENST00000284049 SLC4A2P04920 1241 aa4.69□□□□□ -1.66
CHD1-201ENST00000284049 SUPT5HO00267 1087 aaKnown RBP4.69□□□□□ -1.66
CHD1-201ENST00000284049 KDM2AQ9Y2K7 1162 aa4.68□□□□□ -1.66
CHD1-201ENST00000284049 APLP2Q06481 763 aa4.68□□□□□ -1.66
CHD1-201ENST00000284049 CIZ1Q9ULV3 898 aaPredicted RBP4.68□□□□□ -1.66
CHD1-201ENST00000284049 PLEKHG5O94827 1062 aa4.67□□□□□ -1.66
CHD1-201ENST00000284049 CCDC180Q9P1Z9 1646 aa4.66□□□□□ -1.66
CHD1-201ENST00000284049 SPOCK2Q92563 424 aa4.64□□□□□ -1.67
CHD1-201ENST00000284049 TMEM132AQ24JP5 1023 aa4.62□□□□□ -1.67
CHD1-201ENST00000284049 MIER1Q8N108 512 aa4.62□□□□□ -1.67
CHD1-201ENST00000284049 PKD2Q13563 968 aa4.61□□□□□ -1.67
CHD1-201ENST00000284049 IFNLR1Q8IU57 520 aaPredicted RBP4.59□□□□□ -1.67
CHD1-201ENST00000284049 MYO15BQ96JP2 1530 aa4.58□□□□□ -1.68
CHD1-201ENST00000284049 HOXD11P31277 338 aaPredicted RBP4.58□□□□□ -1.68
CHD1-201ENST00000284049 WDR70Q9NW82 654 aa4.58□□□□□ -1.68
CHD1-201ENST00000284049 NEUROD2Q15784 382 aa4.56□□□□□ -1.68
CHD1-201ENST00000284049 ZNF219Q9P2Y4 722 aaPredicted RBP4.56□□□□□ -1.68
CHD1-201ENST00000284049 P3H3Q8IVL6 736 aa4.55□□□□□ -1.68
CHD1-201ENST00000284049 MYT1LQ9UL68 1186 aa4.55□□□□□ -1.68
CHD1-201ENST00000284049 ARID3AQ99856 593 aa4.55□□□□□ -1.68
CHD1-201ENST00000284049 NPM2Q86SE8 214 aaKnown RBP4.54□□□□□ -1.68
CHD1-201ENST00000284049 ZBTB47Q9UFB7 747 aaPredicted RBP4.53□□□□□ -1.68
CHD1-201ENST00000284049 DMRT2Q9Y5R5 561 aa4.53□□□□□ -1.68
CHD1-201ENST00000284049 TRHP20396 242 aaPredicted RBP4.53□□□□□ -1.68
CHD1-201ENST00000284049 RGL2O15211 777 aa4.52□□□□□ -1.69
CHD1-201ENST00000284049 ZBTB7CA1YPR0 619 aa4.51□□□□□ -1.69
CHD1-201ENST00000284049 RYDENQ9NUL5 291 aaKnown RBP4.51□□□□□ -1.69
CHD1-201ENST00000284049 DCAF1Q9Y4B6 1507 aa4.51□□□□□ -1.69
CHD1-201ENST00000284049 NPM1P06748 294 aaKnown RBP eCLIP4.51□□□□□ -1.69
CHD1-201ENST00000284049 TRIM41Q8WV44 630 aa4.5□□□□□ -1.69
CHD1-201ENST00000284049 TTBK1Q5TCY1 1321 aaPredicted RBP4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms