Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 PRSS3P4-201ENST00000453323 162 ntBASIC3.36□□□□□ -1.87
VPS9D1Q9Y2B5 AC138749.4-201ENST00000563970 127 ntBASIC3.36□□□□□ -1.87
VPS9D1Q9Y2B5 MIR4474-201ENST00000579189 78 ntBASIC3.36□□□□□ -1.87
VPS9D1Q9Y2B5 AC073476.4-201ENST00000628409 72 ntBASIC3.36□□□□□ -1.87
VPS9D1Q9Y2B5 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
VPS9D1Q9Y2B5 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.36□□□□□ -1.87
VPS9D1Q9Y2B5 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS9D1Q9Y2B5 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
VPS9D1Q9Y2B5 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
VPS9D1Q9Y2B5 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
VPS9D1Q9Y2B5 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.35□□□□□ -1.87
VPS9D1Q9Y2B5 RNU6-330P-201ENST00000363015 107 ntBASIC3.35□□□□□ -1.87
VPS9D1Q9Y2B5 RNU6-949P-201ENST00000384040 107 ntBASIC3.35□□□□□ -1.87
VPS9D1Q9Y2B5 RNU6-895P-201ENST00000384125 103 ntBASIC3.35□□□□□ -1.87
VPS9D1Q9Y2B5 RNU6-220P-201ENST00000390919 107 ntBASIC3.35□□□□□ -1.87
VPS9D1Q9Y2B5 RNU6-243P-201ENST00000391140 107 ntBASIC3.35□□□□□ -1.87
VPS9D1Q9Y2B5 RNU6-1254P-201ENST00000391266 104 ntBASIC3.35□□□□□ -1.87
VPS9D1Q9Y2B5 BX276092.1-201ENST00000427368 251 ntBASIC3.35□□□□□ -1.87
VPS9D1Q9Y2B5 HMGN1P18-201ENST00000457642 277 ntBASIC3.35□□□□□ -1.87
VPS9D1Q9Y2B5 SNORD59.2-201ENST00000516873 68 ntBASIC3.35□□□□□ -1.87
VPS9D1Q9Y2B5 WWP1P1-201ENST00000466609 2769 ntBASIC3.35□□□□□ -1.87
VPS9D1Q9Y2B5 AC093010.3-201ENST00000570269 15214 ntBASIC3.34□□□□□ -1.87
VPS9D1Q9Y2B5 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
VPS9D1Q9Y2B5 Y_RNA.443-201ENST00000384135 111 ntBASIC3.34□□□□□ -1.87
VPS9D1Q9Y2B5 SNORD17-201ENST00000390930 237 ntBASIC3.34□□□□□ -1.87
VPS9D1Q9Y2B5 RPS29P4-201ENST00000414733 161 ntBASIC3.34□□□□□ -1.87
VPS9D1Q9Y2B5 RNU7-43P-201ENST00000516554 64 ntBASIC3.34□□□□□ -1.87
VPS9D1Q9Y2B5 MIR2276-201ENST00000516886 89 ntBASIC3.34□□□□□ -1.87
VPS9D1Q9Y2B5 NDUFB9P3-201ENST00000521269 501 ntBASIC3.34□□□□□ -1.87
VPS9D1Q9Y2B5 MIR5094-201ENST00000578766 85 ntBASIC3.34□□□□□ -1.87
VPS9D1Q9Y2B5 AC007179.3-201ENST00000604976 235 ntBASIC3.34□□□□□ -1.87
VPS9D1Q9Y2B5 U3.45-201ENST00000607547 219 ntBASIC3.34□□□□□ -1.87
VPS9D1Q9Y2B5 AL662814.1-201ENST00000617364 121 ntBASIC3.34□□□□□ -1.87
VPS9D1Q9Y2B5 AC008133.2-201ENST00000624540 351 ntBASIC3.34□□□□□ -1.87
VPS9D1Q9Y2B5 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
VPS9D1Q9Y2B5 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC3.34□□□□□ -1.87
VPS9D1Q9Y2B5 RNU4-35P-201ENST00000362588 141 ntBASIC3.33□□□□□ -1.88
VPS9D1Q9Y2B5 RNU6-154P-201ENST00000384306 106 ntBASIC3.33□□□□□ -1.88
VPS9D1Q9Y2B5 MIR7-3-201ENST00000384898 110 ntBASIC3.33□□□□□ -1.88
VPS9D1Q9Y2B5 MIR183-201ENST00000384958 110 ntBASIC3.33□□□□□ -1.88
VPS9D1Q9Y2B5 SNORD90-201ENST00000391145 111 ntBASIC3.33□□□□□ -1.88
VPS9D1Q9Y2B5 RNU6-466P-201ENST00000391224 103 ntBASIC3.33□□□□□ -1.88
VPS9D1Q9Y2B5 SNORA48.8-201ENST00000391324 134 ntBASIC3.33□□□□□ -1.88
VPS9D1Q9Y2B5 AL023284.1-201ENST00000403956 276 ntBASIC3.33□□□□□ -1.88
VPS9D1Q9Y2B5 AC025518.1-201ENST00000479856 347 ntBASIC3.33□□□□□ -1.88
VPS9D1Q9Y2B5 AL513423.1-201ENST00000621695 132 ntBASIC3.33□□□□□ -1.88
VPS9D1Q9Y2B5 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
VPS9D1Q9Y2B5 U6.105-201ENST00000637379 88 ntBASIC3.33□□□□□ -1.88
VPS9D1Q9Y2B5 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.32□□□□□ -1.88
VPS9D1Q9Y2B5 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS9D1Q9Y2B5 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS9D1Q9Y2B5 MIRLET7F1-201ENST00000362202 87 ntBASIC3.32□□□□□ -1.88
VPS9D1Q9Y2B5 RNU4-82P-201ENST00000362443 140 ntBASIC3.32□□□□□ -1.88
VPS9D1Q9Y2B5 MIR660-201ENST00000385235 97 ntBASIC3.32□□□□□ -1.88
VPS9D1Q9Y2B5 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
VPS9D1Q9Y2B5 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
VPS9D1Q9Y2B5 AC092628.1-201ENST00000436250 252 ntBASIC3.32□□□□□ -1.88
VPS9D1Q9Y2B5 SCARNA16.3-201ENST00000516595 184 ntBASIC3.32□□□□□ -1.88
VPS9D1Q9Y2B5 IGKV2-26-201ENST00000518305 343 ntBASIC3.32□□□□□ -1.88
VPS9D1Q9Y2B5 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.32□□□□□ -1.88
VPS9D1Q9Y2B5 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS9D1Q9Y2B5 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS9D1Q9Y2B5 uc_338.1-201ENST00000612113 180 ntBASIC3.32□□□□□ -1.88
VPS9D1Q9Y2B5 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS9D1Q9Y2B5 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
VPS9D1Q9Y2B5 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS9D1Q9Y2B5 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
VPS9D1Q9Y2B5 MAPK10-362ENST00000641864 4484 ntBASIC3.31□□□□□ -1.88
VPS9D1Q9Y2B5 RNA5SP383-201ENST00000362934 120 ntBASIC3.31□□□□□ -1.88
VPS9D1Q9Y2B5 SNORD115-3-201ENST00000363100 82 ntBASIC3.31□□□□□ -1.88
VPS9D1Q9Y2B5 RNA5SP50-201ENST00000363731 107 ntBASIC3.31□□□□□ -1.88
VPS9D1Q9Y2B5 MIR516A2-201ENST00000384888 90 ntBASIC3.31□□□□□ -1.88
VPS9D1Q9Y2B5 MIR516A1-201ENST00000385033 90 ntBASIC3.31□□□□□ -1.88
VPS9D1Q9Y2B5 MIR3200-201ENST00000580767 85 ntBASIC3.31□□□□□ -1.88
VPS9D1Q9Y2B5 AC019176.2-201ENST00000611579 315 ntBASIC3.31□□□□□ -1.88
VPS9D1Q9Y2B5 U6.109-201ENST00000636749 87 ntBASIC3.31□□□□□ -1.88
VPS9D1Q9Y2B5 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
VPS9D1Q9Y2B5 RNU1-58P-201ENST00000362413 163 ntBASIC3.3□□□□□ -1.88
VPS9D1Q9Y2B5 SNORA9-201ENST00000384215 133 ntBASIC3.3□□□□□ -1.88
VPS9D1Q9Y2B5 MIR490-201ENST00000384865 128 ntBASIC3.3□□□□□ -1.88
VPS9D1Q9Y2B5 MIR518E-201ENST00000385252 88 ntBASIC3.3□□□□□ -1.88
VPS9D1Q9Y2B5 HMGN2P39-201ENST00000398005 273 ntBASIC3.3□□□□□ -1.88
VPS9D1Q9Y2B5 RPL23AP83-201ENST00000434984 473 ntBASIC3.3□□□□□ -1.88
VPS9D1Q9Y2B5 snoU13.17-201ENST00000458802 104 ntBASIC3.3□□□□□ -1.88
VPS9D1Q9Y2B5 RN7SL293P-201ENST00000481765 281 ntBASIC3.3□□□□□ -1.88
VPS9D1Q9Y2B5 MIR548AO-201ENST00000579992 96 ntBASIC3.3□□□□□ -1.88
VPS9D1Q9Y2B5 AC103706.3-201ENST00000636297 85 ntBASIC3.3□□□□□ -1.88
VPS9D1Q9Y2B5 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC3.3□□□□□ -1.88
VPS9D1Q9Y2B5 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
VPS9D1Q9Y2B5 MAPK10-322ENST00000641485 4530 ntBASIC3.29□□□□□ -1.88
VPS9D1Q9Y2B5 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
VPS9D1Q9Y2B5 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS9D1Q9Y2B5 Y_RNA.119-201ENST00000363301 96 ntBASIC3.29□□□□□ -1.88
VPS9D1Q9Y2B5 RNU6-291P-201ENST00000384720 107 ntBASIC3.29□□□□□ -1.88
VPS9D1Q9Y2B5 RNVU1-14-201ENST00000384770 164 ntBASIC3.29□□□□□ -1.88
VPS9D1Q9Y2B5 AC019129.1-201ENST00000403786 261 ntBASIC3.29□□□□□ -1.88
VPS9D1Q9Y2B5 AC079150.2-201ENST00000443733 78 ntBASIC3.29□□□□□ -1.88
VPS9D1Q9Y2B5 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS9D1Q9Y2B5 AC026271.5-201ENST00000577873 130 ntBASIC3.29□□□□□ -1.88
VPS9D1Q9Y2B5 MIR4764-201ENST00000580680 88 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 171.3 ms