Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 RNU6-1319P-201ENST00000390855 104 ntBASIC3.28□□□□□ -1.88
SH3RF1Q7Z6J0 RNU6-747P-201ENST00000390928 104 ntBASIC3.28□□□□□ -1.88
SH3RF1Q7Z6J0 RNU6-241P-201ENST00000391148 104 ntBASIC3.28□□□□□ -1.88
SH3RF1Q7Z6J0 RNU6-177P-201ENST00000411257 104 ntBASIC3.28□□□□□ -1.88
SH3RF1Q7Z6J0 AC087499.2-201ENST00000432861 149 ntBASIC3.28□□□□□ -1.88
SH3RF1Q7Z6J0 SNORD109B-201ENST00000458961 67 ntBASIC3.28□□□□□ -1.88
SH3RF1Q7Z6J0 SNORD109A-201ENST00000459128 67 ntBASIC3.28□□□□□ -1.88
SH3RF1Q7Z6J0 AC069114.2-201ENST00000604699 304 ntBASIC3.28□□□□□ -1.88
SH3RF1Q7Z6J0 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
SH3RF1Q7Z6J0 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SH3RF1Q7Z6J0 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SH3RF1Q7Z6J0 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
SH3RF1Q7Z6J0 MIRLET7C-201ENST00000362160 84 ntBASIC3.27□□□□□ -1.89
SH3RF1Q7Z6J0 Y_RNA.171-201ENST00000363760 102 ntBASIC3.27□□□□□ -1.89
SH3RF1Q7Z6J0 RNU6-950P-201ENST00000384651 107 ntBASIC3.27□□□□□ -1.89
SH3RF1Q7Z6J0 AL034345.1-201ENST00000407768 123 ntBASIC3.27□□□□□ -1.89
SH3RF1Q7Z6J0 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC3.27□□□□□ -1.89
SH3RF1Q7Z6J0 AC069257.2-201ENST00000441819 155 ntBASIC3.27□□□□□ -1.89
SH3RF1Q7Z6J0 RNU7-45P-201ENST00000459460 63 ntBASIC3.27□□□□□ -1.89
SH3RF1Q7Z6J0 RNU7-53P-201ENST00000516705 60 ntBASIC3.27□□□□□ -1.89
SH3RF1Q7Z6J0 AC005786.1-201ENST00000588553 154 ntBASIC3.27□□□□□ -1.89
SH3RF1Q7Z6J0 AL512310.12-203ENST00000640543 90 ntBASIC3.27□□□□□ -1.89
SH3RF1Q7Z6J0 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
SH3RF1Q7Z6J0 SNORD115-2-201ENST00000362842 82 ntBASIC3.26□□□□□ -1.89
SH3RF1Q7Z6J0 SNORD115-3-201ENST00000363100 82 ntBASIC3.26□□□□□ -1.89
SH3RF1Q7Z6J0 RNU6-590P-201ENST00000365039 107 ntBASIC3.26□□□□□ -1.89
SH3RF1Q7Z6J0 SNORD115-20-201ENST00000365099 82 ntBASIC3.26□□□□□ -1.89
SH3RF1Q7Z6J0 MIR196B-201ENST00000384852 84 ntBASIC3.26□□□□□ -1.89
SH3RF1Q7Z6J0 AC104332.2-201ENST00000429959 156 ntBASIC3.26□□□□□ -1.89
SH3RF1Q7Z6J0 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC3.26□□□□□ -1.89
SH3RF1Q7Z6J0 MIR1270-201ENST00000459320 83 ntBASIC3.26□□□□□ -1.89
SH3RF1Q7Z6J0 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.26□□□□□ -1.89
SH3RF1Q7Z6J0 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
SH3RF1Q7Z6J0 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.25□□□□□ -1.89
SH3RF1Q7Z6J0 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.25□□□□□ -1.89
SH3RF1Q7Z6J0 AP006437.1-201ENST00000641440 3685 ntBASIC3.25□□□□□ -1.89
SH3RF1Q7Z6J0 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.25□□□□□ -1.89
SH3RF1Q7Z6J0 SNORA22.1-201ENST00000362701 134 ntBASIC3.25□□□□□ -1.89
SH3RF1Q7Z6J0 RNU6-833P-201ENST00000363486 107 ntBASIC3.25□□□□□ -1.89
SH3RF1Q7Z6J0 RNU6-461P-201ENST00000364195 107 ntBASIC3.25□□□□□ -1.89
SH3RF1Q7Z6J0 RNU6-1019P-201ENST00000364424 107 ntBASIC3.25□□□□□ -1.89
SH3RF1Q7Z6J0 SNORA1.1-201ENST00000364671 133 ntBASIC3.25□□□□□ -1.89
SH3RF1Q7Z6J0 MIR887-201ENST00000401258 79 ntBASIC3.25□□□□□ -1.89
SH3RF1Q7Z6J0 RN7SKP192-201ENST00000411291 327 ntBASIC3.25□□□□□ -1.89
SH3RF1Q7Z6J0 RNU7-67P-201ENST00000459003 62 ntBASIC3.25□□□□□ -1.89
SH3RF1Q7Z6J0 AC008413.1-201ENST00000511864 177 ntBASIC3.25□□□□□ -1.89
SH3RF1Q7Z6J0 MIR7843-201ENST00000622274 79 ntBASIC3.25□□□□□ -1.89
SH3RF1Q7Z6J0 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
SH3RF1Q7Z6J0 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SH3RF1Q7Z6J0 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC3.24□□□□□ -1.89
SH3RF1Q7Z6J0 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
SH3RF1Q7Z6J0 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SH3RF1Q7Z6J0 Y_RNA.370-201ENST00000365589 108 ntBASIC3.24□□□□□ -1.89
SH3RF1Q7Z6J0 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.24□□□□□ -1.89
SH3RF1Q7Z6J0 AC108729.3-201ENST00000513484 108 ntBASIC3.24□□□□□ -1.89
SH3RF1Q7Z6J0 RNU6-1258P-201ENST00000516911 111 ntBASIC3.24□□□□□ -1.89
SH3RF1Q7Z6J0 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC3.24□□□□□ -1.89
SH3RF1Q7Z6J0 MIR548AE2-201ENST00000583456 67 ntBASIC3.24□□□□□ -1.89
SH3RF1Q7Z6J0 AC103810.7-201ENST00000607821 91 ntBASIC3.24□□□□□ -1.89
SH3RF1Q7Z6J0 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SH3RF1Q7Z6J0 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SH3RF1Q7Z6J0 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
SH3RF1Q7Z6J0 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.23□□□□□ -1.89
SH3RF1Q7Z6J0 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
SH3RF1Q7Z6J0 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.23□□□□□ -1.89
SH3RF1Q7Z6J0 SNORA70B-201ENST00000384210 135 ntBASIC3.23□□□□□ -1.89
SH3RF1Q7Z6J0 Y_RNA.545-201ENST00000384652 105 ntBASIC3.23□□□□□ -1.89
SH3RF1Q7Z6J0 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
SH3RF1Q7Z6J0 Y_RNA.609-201ENST00000410669 89 ntBASIC3.23□□□□□ -1.89
SH3RF1Q7Z6J0 AC090844.1-201ENST00000422019 156 ntBASIC3.23□□□□□ -1.89
SH3RF1Q7Z6J0 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.23□□□□□ -1.89
SH3RF1Q7Z6J0 AC114801.3-201ENST00000510231 177 ntBASIC3.23□□□□□ -1.89
SH3RF1Q7Z6J0 RNU7-12P-201ENST00000516030 62 ntBASIC3.23□□□□□ -1.89
SH3RF1Q7Z6J0 RNU6-958P-201ENST00000516995 106 ntBASIC3.23□□□□□ -1.89
SH3RF1Q7Z6J0 DNAJC19P9-201ENST00000555084 351 ntBASIC3.23□□□□□ -1.89
SH3RF1Q7Z6J0 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.23□□□□□ -1.89
SH3RF1Q7Z6J0 MIR376B-201ENST00000614515 100 ntBASIC3.23□□□□□ -1.89
SH3RF1Q7Z6J0 AP000648.3-201ENST00000623539 4507 ntBASIC3.22□□□□□ -1.89
SH3RF1Q7Z6J0 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.22□□□□□ -1.89
SH3RF1Q7Z6J0 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
SH3RF1Q7Z6J0 SNORD115-27-201ENST00000364430 82 ntBASIC3.22□□□□□ -1.89
SH3RF1Q7Z6J0 RNU6-524P-201ENST00000384270 107 ntBASIC3.22□□□□□ -1.89
SH3RF1Q7Z6J0 RNU6-851P-201ENST00000384565 107 ntBASIC3.22□□□□□ -1.89
SH3RF1Q7Z6J0 MIR452-201ENST00000385020 85 ntBASIC3.22□□□□□ -1.89
SH3RF1Q7Z6J0 MIR29C-201ENST00000385231 88 ntBASIC3.22□□□□□ -1.89
SH3RF1Q7Z6J0 U8.16-201ENST00000391279 133 ntBASIC3.22□□□□□ -1.89
SH3RF1Q7Z6J0 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.22□□□□□ -1.89
SH3RF1Q7Z6J0 Z96811.1-201ENST00000445880 108 ntBASIC3.22□□□□□ -1.89
SH3RF1Q7Z6J0 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
SH3RF1Q7Z6J0 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SH3RF1Q7Z6J0 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
SH3RF1Q7Z6J0 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
SH3RF1Q7Z6J0 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SH3RF1Q7Z6J0 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SH3RF1Q7Z6J0 AC009487.2-201ENST00000420969 6821 ntBASIC3.21□□□□□ -1.9
SH3RF1Q7Z6J0 SNORA9.2-201ENST00000365361 133 ntBASIC3.21□□□□□ -1.9
SH3RF1Q7Z6J0 Y_RNA.470-201ENST00000384307 117 ntBASIC3.21□□□□□ -1.9
SH3RF1Q7Z6J0 MIR512-1-201ENST00000384913 84 ntBASIC3.21□□□□□ -1.9
SH3RF1Q7Z6J0 MIR627-201ENST00000384979 97 ntBASIC3.21□□□□□ -1.9
SH3RF1Q7Z6J0 SNORA31.10-201ENST00000516482 106 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms