Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 AC012313.1-201ENST00000593393 3059 ntBASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 KRT17P1-201ENST00000399211 1546 ntBASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 AC137761.2-201ENST00000561729 223 ntBASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 AC145350.3-201ENST00000569033 163 ntBASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 AC008694.1-202ENST00000636953 945 ntBASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 AC010980.2-201ENST00000587099 1412 ntBASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USH1CQ9Y6N9 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 AC083906.6-201ENST00000641366 219 ntBASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
USH1CQ9Y6N9 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
USH1CQ9Y6N9 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms