Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC35.88■■■■□ 3.33
SHROOM4Q9ULL8 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC35.88■■■■□ 3.33
SHROOM4Q9ULL8 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC35.88■■■■□ 3.33
SHROOM4Q9ULL8 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC35.88■■■■□ 3.33
SHROOM4Q9ULL8 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC35.87■■■■□ 3.33
SHROOM4Q9ULL8 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC35.87■■■■□ 3.33
SHROOM4Q9ULL8 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC35.87■■■■□ 3.33
SHROOM4Q9ULL8 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC35.87■■■■□ 3.33
SHROOM4Q9ULL8 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC35.87■■■■□ 3.33
SHROOM4Q9ULL8 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC35.87■■■■□ 3.33
SHROOM4Q9ULL8 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC35.87■■■■□ 3.33
SHROOM4Q9ULL8 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC35.87■■■■□ 3.33
SHROOM4Q9ULL8 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC35.87■■■■□ 3.33
SHROOM4Q9ULL8 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC35.87■■■■□ 3.33
SHROOM4Q9ULL8 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC35.87■■■■□ 3.33
SHROOM4Q9ULL8 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC35.87■■■■□ 3.33
SHROOM4Q9ULL8 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC35.86■■■■□ 3.33
SHROOM4Q9ULL8 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC35.86■■■■□ 3.33
SHROOM4Q9ULL8 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC35.86■■■■□ 3.33
SHROOM4Q9ULL8 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC35.86■■■■□ 3.33
SHROOM4Q9ULL8 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC35.86■■■■□ 3.33
SHROOM4Q9ULL8 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC35.86■■■■□ 3.33
SHROOM4Q9ULL8 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC35.86■■■■□ 3.33
SHROOM4Q9ULL8 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC35.86■■■■□ 3.33
SHROOM4Q9ULL8 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC35.86■■■■□ 3.33
SHROOM4Q9ULL8 HLA-F-220ENST00000434407 884 ntBASIC35.86■■■■□ 3.33
SHROOM4Q9ULL8 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC35.86■■■■□ 3.33
SHROOM4Q9ULL8 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC35.86■■■■□ 3.33
SHROOM4Q9ULL8 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC35.86■■■■□ 3.33
SHROOM4Q9ULL8 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC35.85■■■■□ 3.33
SHROOM4Q9ULL8 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC35.85■■■■□ 3.33
SHROOM4Q9ULL8 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC35.85■■■■□ 3.33
SHROOM4Q9ULL8 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC35.85■■■■□ 3.33
SHROOM4Q9ULL8 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC35.85■■■■□ 3.33
SHROOM4Q9ULL8 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC35.85■■■■□ 3.33
SHROOM4Q9ULL8 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC35.85■■■■□ 3.33
SHROOM4Q9ULL8 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC35.85■■■■□ 3.33
SHROOM4Q9ULL8 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC35.85■■■■□ 3.33
SHROOM4Q9ULL8 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC35.85■■■■□ 3.33
SHROOM4Q9ULL8 RPP21-221ENST00000428040 594 ntTSL 2 BASIC35.85■■■■□ 3.33
SHROOM4Q9ULL8 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC35.85■■■■□ 3.33
SHROOM4Q9ULL8 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC35.85■■■■□ 3.33
SHROOM4Q9ULL8 PPIE-208ENST00000470213 927 ntTSL 3 BASIC35.85■■■■□ 3.33
SHROOM4Q9ULL8 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC35.85■■■■□ 3.33
SHROOM4Q9ULL8 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC35.85■■■■□ 3.33
SHROOM4Q9ULL8 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC35.85■■■■□ 3.33
SHROOM4Q9ULL8 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC35.85■■■■□ 3.33
SHROOM4Q9ULL8 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC35.84■■■■□ 3.33
SHROOM4Q9ULL8 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC35.84■■■■□ 3.33
SHROOM4Q9ULL8 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC35.84■■■■□ 3.33
SHROOM4Q9ULL8 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC35.84■■■■□ 3.33
SHROOM4Q9ULL8 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC35.84■■■■□ 3.33
SHROOM4Q9ULL8 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC35.84■■■■□ 3.33
SHROOM4Q9ULL8 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC35.84■■■■□ 3.33
SHROOM4Q9ULL8 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC35.84■■■■□ 3.33
SHROOM4Q9ULL8 CALM3-211ENST00000598871 561 ntTSL 4 BASIC35.84■■■■□ 3.33
SHROOM4Q9ULL8 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC35.84■■■■□ 3.33
SHROOM4Q9ULL8 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC35.83■■■■□ 3.33
SHROOM4Q9ULL8 GPAT2P1-201ENST00000444924 1672 ntBASIC35.83■■■■□ 3.33
SHROOM4Q9ULL8 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC35.83■■■■□ 3.33
SHROOM4Q9ULL8 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC35.83■■■■□ 3.33
SHROOM4Q9ULL8 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC35.83■■■■□ 3.33
SHROOM4Q9ULL8 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC35.83■■■■□ 3.33
SHROOM4Q9ULL8 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC35.83■■■■□ 3.33
SHROOM4Q9ULL8 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC35.83■■■■□ 3.33
SHROOM4Q9ULL8 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC35.83■■■■□ 3.33
SHROOM4Q9ULL8 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC35.83■■■■□ 3.33
SHROOM4Q9ULL8 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC35.83■■■■□ 3.33
SHROOM4Q9ULL8 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC35.83■■■■□ 3.33
SHROOM4Q9ULL8 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC35.83■■■■□ 3.33
SHROOM4Q9ULL8 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC35.83■■■■□ 3.33
SHROOM4Q9ULL8 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC35.83■■■■□ 3.33
SHROOM4Q9ULL8 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC35.83■■■■□ 3.33
SHROOM4Q9ULL8 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC35.83■■■■□ 3.33
SHROOM4Q9ULL8 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC35.82■■■■□ 3.33
SHROOM4Q9ULL8 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC35.82■■■■□ 3.33
SHROOM4Q9ULL8 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC35.82■■■■□ 3.32
SHROOM4Q9ULL8 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC35.82■■■■□ 3.32
SHROOM4Q9ULL8 RNA5SP419-201ENST00000515908 135 ntBASIC35.82■■■■□ 3.32
SHROOM4Q9ULL8 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC35.82■■■■□ 3.32
SHROOM4Q9ULL8 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC35.82■■■■□ 3.32
SHROOM4Q9ULL8 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC35.82■■■■□ 3.32
SHROOM4Q9ULL8 TP73-202ENST00000354437 2140 ntTSL 5 BASIC35.82■■■■□ 3.32
SHROOM4Q9ULL8 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC35.82■■■■□ 3.32
SHROOM4Q9ULL8 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC35.82■■■■□ 3.32
SHROOM4Q9ULL8 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC35.81■■■■□ 3.32
SHROOM4Q9ULL8 IL11-204ENST00000590625 1028 ntTSL 2 BASIC35.81■■■■□ 3.32
SHROOM4Q9ULL8 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC35.81■■■■□ 3.32
SHROOM4Q9ULL8 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC35.81■■■■□ 3.32
SHROOM4Q9ULL8 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC35.8■■■■□ 3.32
SHROOM4Q9ULL8 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC35.8■■■■□ 3.32
SHROOM4Q9ULL8 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC35.8■■■■□ 3.32
SHROOM4Q9ULL8 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC35.8■■■■□ 3.32
SHROOM4Q9ULL8 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC35.8■■■■□ 3.32
SHROOM4Q9ULL8 AC091304.2-201ENST00000564639 760 ntBASIC35.8■■■■□ 3.32
SHROOM4Q9ULL8 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC35.8■■■■□ 3.32
SHROOM4Q9ULL8 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC35.8■■■■□ 3.32
SHROOM4Q9ULL8 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC35.8■■■■□ 3.32
SHROOM4Q9ULL8 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC35.8■■■■□ 3.32
SHROOM4Q9ULL8 Z82202.1-201ENST00000623446 1880 ntBASIC35.8■■■■□ 3.32
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms