Protein–RNA interactions for Protein: Q9UBI1

COMMD3, COMM domain-containing protein 3, humanhuman

Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3Q9UBI1 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 YBX1P1-201ENST00000445822 960 ntBASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 RHOF-204ENST00000537265 699 ntTSL 2 BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 AC083906.6-201ENST00000641366 219 ntBASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
COMMD3Q9UBI1 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 FEM1AP3-201ENST00000403722 1741 ntBASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 GNAS-203ENST00000306120 1878 ntBASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COMMD3Q9UBI1 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 UBE2DNL-204ENST00000602536 740 ntBASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 PCDHA12-202ENST00000613593 2588 ntBASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COMMD3Q9UBI1 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COMMD3Q9UBI1 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.6■□□□□ 0.25
COMMD3Q9UBI1 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
COMMD3Q9UBI1 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.6■□□□□ 0.25
COMMD3Q9UBI1 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC16.6■□□□□ 0.25
COMMD3Q9UBI1 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
COMMD3Q9UBI1 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COMMD3Q9UBI1 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COMMD3Q9UBI1 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
COMMD3Q9UBI1 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.6■□□□□ 0.25
COMMD3Q9UBI1 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COMMD3Q9UBI1 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COMMD3Q9UBI1 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COMMD3Q9UBI1 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
COMMD3Q9UBI1 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC16.6■□□□□ 0.25
COMMD3Q9UBI1 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COMMD3Q9UBI1 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms