Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
DDX4Q9NQI0 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
DDX4Q9NQI0 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC22.31■■□□□ 1.16
DDX4Q9NQI0 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
DDX4Q9NQI0 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC22.31■■□□□ 1.16
DDX4Q9NQI0 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC22.31■■□□□ 1.16
DDX4Q9NQI0 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
DDX4Q9NQI0 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
DDX4Q9NQI0 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
DDX4Q9NQI0 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
DDX4Q9NQI0 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
DDX4Q9NQI0 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC22.3■■□□□ 1.16
DDX4Q9NQI0 KRT8P32-201ENST00000512863 1461 ntBASIC22.3■■□□□ 1.16
DDX4Q9NQI0 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
DDX4Q9NQI0 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
DDX4Q9NQI0 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
DDX4Q9NQI0 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
DDX4Q9NQI0 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC22.3■■□□□ 1.16
DDX4Q9NQI0 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC22.3■■□□□ 1.16
DDX4Q9NQI0 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
DDX4Q9NQI0 WDR6-223ENST00000627177 207 ntTSL 2 BASIC22.3■■□□□ 1.16
DDX4Q9NQI0 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC22.3■■□□□ 1.16
DDX4Q9NQI0 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
DDX4Q9NQI0 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC22.3■■□□□ 1.16
DDX4Q9NQI0 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
DDX4Q9NQI0 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
DDX4Q9NQI0 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
DDX4Q9NQI0 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC22.3■■□□□ 1.16
DDX4Q9NQI0 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
DDX4Q9NQI0 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
DDX4Q9NQI0 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
DDX4Q9NQI0 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC22.29■■□□□ 1.16
DDX4Q9NQI0 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC22.29■■□□□ 1.16
DDX4Q9NQI0 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC22.29■■□□□ 1.16
DDX4Q9NQI0 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
DDX4Q9NQI0 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
DDX4Q9NQI0 AC016734.2-201ENST00000624325 1377 ntBASIC22.29■■□□□ 1.16
DDX4Q9NQI0 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC22.29■■□□□ 1.16
DDX4Q9NQI0 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC22.29■■□□□ 1.16
DDX4Q9NQI0 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC22.29■■□□□ 1.16
DDX4Q9NQI0 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC22.29■■□□□ 1.16
DDX4Q9NQI0 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
DDX4Q9NQI0 AC011498.5-201ENST00000592027 486 ntBASIC22.29■■□□□ 1.16
DDX4Q9NQI0 AL391807.1-203ENST00000604392 2365 ntBASIC22.29■■□□□ 1.16
DDX4Q9NQI0 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
DDX4Q9NQI0 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
DDX4Q9NQI0 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
DDX4Q9NQI0 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
DDX4Q9NQI0 AC141586.3-201ENST00000562166 1838 ntBASIC22.29■■□□□ 1.16
DDX4Q9NQI0 AL162741.1-201ENST00000565563 1558 ntBASIC22.29■■□□□ 1.16
DDX4Q9NQI0 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
DDX4Q9NQI0 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC22.28■■□□□ 1.16
DDX4Q9NQI0 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC22.28■■□□□ 1.16
DDX4Q9NQI0 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC22.28■■□□□ 1.16
DDX4Q9NQI0 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
DDX4Q9NQI0 ENSA-205ENST00000361532 792 ntTSL 2 BASIC22.28■■□□□ 1.16
DDX4Q9NQI0 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
DDX4Q9NQI0 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC22.28■■□□□ 1.16
DDX4Q9NQI0 AL450487.1-201ENST00000426799 995 ntBASIC22.28■■□□□ 1.16
DDX4Q9NQI0 KRT18P23-201ENST00000435622 1283 ntBASIC22.28■■□□□ 1.16
DDX4Q9NQI0 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC22.28■■□□□ 1.16
DDX4Q9NQI0 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
DDX4Q9NQI0 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC22.28■■□□□ 1.16
DDX4Q9NQI0 MIR3180-1-201ENST00000580374 94 ntBASIC22.28■■□□□ 1.16
DDX4Q9NQI0 MIR3180-3-201ENST00000584616 94 ntBASIC22.28■■□□□ 1.16
DDX4Q9NQI0 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
DDX4Q9NQI0 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
DDX4Q9NQI0 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC22.28■■□□□ 1.16
DDX4Q9NQI0 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
DDX4Q9NQI0 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC22.28■■□□□ 1.16
DDX4Q9NQI0 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
DDX4Q9NQI0 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
DDX4Q9NQI0 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
DDX4Q9NQI0 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
DDX4Q9NQI0 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
DDX4Q9NQI0 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
DDX4Q9NQI0 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
DDX4Q9NQI0 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
DDX4Q9NQI0 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC22.27■■□□□ 1.16
DDX4Q9NQI0 AP002383.4-201ENST00000442518 975 ntBASIC22.27■■□□□ 1.16
DDX4Q9NQI0 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
DDX4Q9NQI0 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC22.27■■□□□ 1.16
DDX4Q9NQI0 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC22.27■■□□□ 1.16
DDX4Q9NQI0 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
DDX4Q9NQI0 AL136038.4-201ENST00000603606 1261 ntBASIC22.27■■□□□ 1.16
DDX4Q9NQI0 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
DDX4Q9NQI0 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
DDX4Q9NQI0 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
DDX4Q9NQI0 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC22.27■■□□□ 1.16
DDX4Q9NQI0 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
DDX4Q9NQI0 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
DDX4Q9NQI0 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC22.27■■□□□ 1.15
DDX4Q9NQI0 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC22.27■■□□□ 1.15
DDX4Q9NQI0 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
DDX4Q9NQI0 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
DDX4Q9NQI0 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
DDX4Q9NQI0 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
DDX4Q9NQI0 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
DDX4Q9NQI0 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
DDX4Q9NQI0 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC22.26■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms