Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NKX3-1Q99801 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NKX3-1Q99801 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
NKX3-1Q99801 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC16.48■□□□□ 0.23
NKX3-1Q99801 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.48■□□□□ 0.23
NKX3-1Q99801 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NKX3-1Q99801 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
NKX3-1Q99801 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC16.48■□□□□ 0.23
NKX3-1Q99801 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC16.47■□□□□ 0.23
NKX3-1Q99801 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NKX3-1Q99801 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NKX3-1Q99801 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NKX3-1Q99801 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NKX3-1Q99801 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC16.47■□□□□ 0.23
NKX3-1Q99801 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC16.47■□□□□ 0.23
NKX3-1Q99801 RHEB-204ENST00000472642 900 ntTSL 3 BASIC16.47■□□□□ 0.23
NKX3-1Q99801 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC16.47■□□□□ 0.23
NKX3-1Q99801 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC16.47■□□□□ 0.23
NKX3-1Q99801 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NKX3-1Q99801 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC16.47■□□□□ 0.23
NKX3-1Q99801 AL121906.2-201ENST00000621597 723 ntBASIC16.47■□□□□ 0.23
NKX3-1Q99801 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
NKX3-1Q99801 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
NKX3-1Q99801 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
NKX3-1Q99801 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NKX3-1Q99801 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
NKX3-1Q99801 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NKX3-1Q99801 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
NKX3-1Q99801 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC16.47■□□□□ 0.23
NKX3-1Q99801 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NKX3-1Q99801 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC16.47■□□□□ 0.23
NKX3-1Q99801 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NKX3-1Q99801 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NKX3-1Q99801 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
NKX3-1Q99801 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
NKX3-1Q99801 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
NKX3-1Q99801 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX3-1Q99801 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX3-1Q99801 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC16.46■□□□□ 0.23
NKX3-1Q99801 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
NKX3-1Q99801 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.46■□□□□ 0.23
NKX3-1Q99801 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
NKX3-1Q99801 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX3-1Q99801 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX3-1Q99801 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX3-1Q99801 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
NKX3-1Q99801 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX3-1Q99801 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX3-1Q99801 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX3-1Q99801 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
NKX3-1Q99801 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX3-1Q99801 ANO7L1-203ENST00000602586 1720 ntBASIC16.46■□□□□ 0.23
NKX3-1Q99801 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX3-1Q99801 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC16.46■□□□□ 0.23
NKX3-1Q99801 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
NKX3-1Q99801 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX3-1Q99801 PNMA6B-201ENST00000538162 1200 ntBASIC16.46■□□□□ 0.23
NKX3-1Q99801 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC16.46■□□□□ 0.23
NKX3-1Q99801 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC16.46■□□□□ 0.23
NKX3-1Q99801 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
NKX3-1Q99801 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX3-1Q99801 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
NKX3-1Q99801 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX3-1Q99801 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX3-1Q99801 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.46■□□□□ 0.23
NKX3-1Q99801 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.46■□□□□ 0.23
NKX3-1Q99801 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC16.46■□□□□ 0.23
NKX3-1Q99801 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX3-1Q99801 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.46■□□□□ 0.23
NKX3-1Q99801 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
NKX3-1Q99801 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX3-1Q99801 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX3-1Q99801 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX3-1Q99801 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.22
NKX3-1Q99801 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC16.46■□□□□ 0.22
NKX3-1Q99801 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX3-1Q99801 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX3-1Q99801 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX3-1Q99801 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX3-1Q99801 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX3-1Q99801 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
NKX3-1Q99801 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
NKX3-1Q99801 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
NKX3-1Q99801 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
NKX3-1Q99801 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC16.45■□□□□ 0.22
NKX3-1Q99801 TSPY20P-201ENST00000450910 630 ntBASIC16.45■□□□□ 0.22
NKX3-1Q99801 AC097658.1-201ENST00000475555 843 ntBASIC16.45■□□□□ 0.22
NKX3-1Q99801 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC16.45■□□□□ 0.22
NKX3-1Q99801 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX3-1Q99801 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC16.45■□□□□ 0.22
NKX3-1Q99801 SOX15-203ENST00000570788 1093 ntBASIC16.45■□□□□ 0.22
NKX3-1Q99801 KLF2-202ENST00000592003 564 ntTSL 3 BASIC16.45■□□□□ 0.22
NKX3-1Q99801 AC083880.1-201ENST00000608266 535 ntBASIC16.45■□□□□ 0.22
NKX3-1Q99801 MYC-209ENST00000641252 345 ntBASIC16.45■□□□□ 0.22
NKX3-1Q99801 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
NKX3-1Q99801 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX3-1Q99801 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
NKX3-1Q99801 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX3-1Q99801 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX3-1Q99801 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms