Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SNRNP40Q96DI7 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
SNRNP40Q96DI7 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 GOLGA6L5P-202ENST00000515341 1828 ntBASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 FOSL1P1-201ENST00000511041 816 ntBASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 RNF126P1-202ENST00000569893 925 ntBASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SNRNP40Q96DI7 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC16.97■□□□□ 0.31
SNRNP40Q96DI7 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 AL022342.1-201ENST00000400363 863 ntBASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 AC079781.3-201ENST00000449110 356 ntBASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 TOB2P1-201ENST00000469761 992 ntBASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 AC012615.1-201ENST00000565797 1299 ntBASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 GPALPP1-207ENST00000611650 899 ntBASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 GAS2L1P1-201ENST00000420145 1480 ntBASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
SNRNP40Q96DI7 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC16.96■□□□□ 0.3
SNRNP40Q96DI7 KRT8P3-201ENST00000519669 1449 ntBASIC16.96■□□□□ 0.3
SNRNP40Q96DI7 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
SNRNP40Q96DI7 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SNRNP40Q96DI7 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SNRNP40Q96DI7 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SNRNP40Q96DI7 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SNRNP40Q96DI7 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SNRNP40Q96DI7 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SNRNP40Q96DI7 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC16.95■□□□□ 0.3
SNRNP40Q96DI7 KRT18P31-201ENST00000506277 1292 ntBASIC16.95■□□□□ 0.3
SNRNP40Q96DI7 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms