Protein–RNA interactions for Protein: Q5VTB9

RNF220, E3 ubiquitin-protein ligase RNF220, humanhuman

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220Q5VTB9 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF220Q5VTB9 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF220Q5VTB9 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF220Q5VTB9 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF220Q5VTB9 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 NCF1B-203ENST00000435988 1254 ntBASIC18.17■□□□□ 0.5
RNF220Q5VTB9 GUSBP6-202ENST00000438529 1198 ntBASIC18.17■□□□□ 0.5
RNF220Q5VTB9 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.17■□□□□ 0.5
RNF220Q5VTB9 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF220Q5VTB9 AC018695.7-201ENST00000624587 2492 ntBASIC18.16■□□□□ 0.5
RNF220Q5VTB9 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 AC080080.1-201ENST00000625121 2420 ntBASIC18.16■□□□□ 0.5
RNF220Q5VTB9 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 SLC29A4P1-201ENST00000398760 971 ntBASIC18.16■□□□□ 0.5
RNF220Q5VTB9 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.16■□□□□ 0.5
RNF220Q5VTB9 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 AC116351.2-201ENST00000606540 1585 ntBASIC18.16■□□□□ 0.5
RNF220Q5VTB9 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RNF220Q5VTB9 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF220Q5VTB9 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.15■□□□□ 0.5
RNF220Q5VTB9 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.15■□□□□ 0.5
RNF220Q5VTB9 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF220Q5VTB9 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF220Q5VTB9 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF220Q5VTB9 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF220Q5VTB9 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
RNF220Q5VTB9 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF220Q5VTB9 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RNF220Q5VTB9 AL390719.1-204ENST00000412397 1219 ntBASIC18.15■□□□□ 0.5
RNF220Q5VTB9 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.15■□□□□ 0.5
RNF220Q5VTB9 TSPY6P-201ENST00000448518 926 ntBASIC18.15■□□□□ 0.5
RNF220Q5VTB9 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.15■□□□□ 0.5
RNF220Q5VTB9 AC005829.2-201ENST00000571422 1056 ntBASIC18.15■□□□□ 0.5
RNF220Q5VTB9 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms