Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.83■□□□□ 0.45
LRIF1Q5T3J3 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.83■□□□□ 0.45
LRIF1Q5T3J3 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LRIF1Q5T3J3 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC17.83■□□□□ 0.44
LRIF1Q5T3J3 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LRIF1Q5T3J3 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LRIF1Q5T3J3 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LRIF1Q5T3J3 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LRIF1Q5T3J3 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
LRIF1Q5T3J3 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LRIF1Q5T3J3 AC008403.3-201ENST00000598924 454 ntBASIC17.83■□□□□ 0.44
LRIF1Q5T3J3 AC068587.9-201ENST00000641814 219 ntBASIC17.83■□□□□ 0.44
LRIF1Q5T3J3 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
LRIF1Q5T3J3 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LRIF1Q5T3J3 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
LRIF1Q5T3J3 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LRIF1Q5T3J3 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.83■□□□□ 0.44
LRIF1Q5T3J3 AL133373.2-201ENST00000623187 2828 ntBASIC17.83■□□□□ 0.44
LRIF1Q5T3J3 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
LRIF1Q5T3J3 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LRIF1Q5T3J3 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.83■□□□□ 0.44
LRIF1Q5T3J3 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 AC018470.1-201ENST00000624790 3129 ntBASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 POU5F1P3-201ENST00000428824 1078 ntBASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.82■□□□□ 0.44
LRIF1Q5T3J3 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 Z85996.1-201ENST00000494644 937 ntBASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 AC068880.1-201ENST00000507289 2297 ntBASIC17.81■□□□□ 0.44
LRIF1Q5T3J3 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRIF1Q5T3J3 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRIF1Q5T3J3 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRIF1Q5T3J3 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRIF1Q5T3J3 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRIF1Q5T3J3 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRIF1Q5T3J3 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.8■□□□□ 0.44
LRIF1Q5T3J3 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRIF1Q5T3J3 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.8■□□□□ 0.44
LRIF1Q5T3J3 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LRIF1Q5T3J3 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRIF1Q5T3J3 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LRIF1Q5T3J3 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
LRIF1Q5T3J3 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LRIF1Q5T3J3 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms