Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC23.11■■□□□ 1.29
CCDC88AQ3V6T2 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC23.11■■□□□ 1.29
CCDC88AQ3V6T2 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC88AQ3V6T2 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC23.11■■□□□ 1.29
CCDC88AQ3V6T2 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC88AQ3V6T2 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC23.11■■□□□ 1.29
CCDC88AQ3V6T2 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC23.11■■□□□ 1.29
CCDC88AQ3V6T2 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC88AQ3V6T2 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC23.11■■□□□ 1.29
CCDC88AQ3V6T2 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC23.11■■□□□ 1.29
CCDC88AQ3V6T2 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC23.11■■□□□ 1.29
CCDC88AQ3V6T2 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC23.11■■□□□ 1.29
CCDC88AQ3V6T2 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC23.11■■□□□ 1.29
CCDC88AQ3V6T2 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC88AQ3V6T2 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC88AQ3V6T2 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC23.1■■□□□ 1.29
CCDC88AQ3V6T2 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC88AQ3V6T2 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC23.1■■□□□ 1.29
CCDC88AQ3V6T2 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC23.1■■□□□ 1.29
CCDC88AQ3V6T2 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC88AQ3V6T2 Z82202.1-201ENST00000623446 1880 ntBASIC23.1■■□□□ 1.29
CCDC88AQ3V6T2 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC88AQ3V6T2 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC88AQ3V6T2 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC88AQ3V6T2 AC073648.2-201ENST00000510116 352 ntBASIC23.1■■□□□ 1.29
CCDC88AQ3V6T2 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
CCDC88AQ3V6T2 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC23.1■■□□□ 1.29
CCDC88AQ3V6T2 GPR32P1-201ENST00000601788 811 ntBASIC23.1■■□□□ 1.29
CCDC88AQ3V6T2 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC88AQ3V6T2 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC23.1■■□□□ 1.29
CCDC88AQ3V6T2 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC88AQ3V6T2 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC88AQ3V6T2 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC23.1■■□□□ 1.29
CCDC88AQ3V6T2 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC88AQ3V6T2 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
CCDC88AQ3V6T2 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC23.1■■□□□ 1.29
CCDC88AQ3V6T2 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC23.1■■□□□ 1.29
CCDC88AQ3V6T2 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 CALM3-211ENST00000598871 561 ntTSL 4 BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 TK1-205ENST00000590862 642 ntTSL 3 BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC23.09■■□□□ 1.29
CCDC88AQ3V6T2 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC88AQ3V6T2 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC88AQ3V6T2 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC88AQ3V6T2 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC88AQ3V6T2 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC23.08■■□□□ 1.29
CCDC88AQ3V6T2 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC23.08■■□□□ 1.29
CCDC88AQ3V6T2 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC23.08■■□□□ 1.29
CCDC88AQ3V6T2 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC88AQ3V6T2 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC88AQ3V6T2 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC88AQ3V6T2 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC88AQ3V6T2 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC88AQ3V6T2 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC23.08■■□□□ 1.29
CCDC88AQ3V6T2 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC23.08■■□□□ 1.29
CCDC88AQ3V6T2 MIR3917-201ENST00000580971 93 ntBASIC23.08■■□□□ 1.29
CCDC88AQ3V6T2 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC23.08■■□□□ 1.29
CCDC88AQ3V6T2 AL353801.3-201ENST00000609898 542 ntBASIC23.08■■□□□ 1.29
CCDC88AQ3V6T2 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC23.08■■□□□ 1.29
CCDC88AQ3V6T2 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC23.08■■□□□ 1.28
CCDC88AQ3V6T2 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
CCDC88AQ3V6T2 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
CCDC88AQ3V6T2 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
CCDC88AQ3V6T2 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 ABBA01031661.1-201ENST00000634362 1253 ntBASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 AC125437.2-201ENST00000625180 2167 ntBASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC23.07■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms