Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 AP000523.1-201ENST00000398242 1049 ntBASIC18.14■□□□□ 0.49
COL28A1Q2UY09 TUBB8P6-201ENST00000436895 1288 ntBASIC18.14■□□□□ 0.49
COL28A1Q2UY09 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 TSSC2-201ENST00000450217 709 ntBASIC18.14■□□□□ 0.49
COL28A1Q2UY09 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 AC092183.1-201ENST00000469884 875 ntBASIC18.14■□□□□ 0.49
COL28A1Q2UY09 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 PCDHAC2-203ENST00000615316 3011 ntBASIC18.14■□□□□ 0.49
COL28A1Q2UY09 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
COL28A1Q2UY09 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL28A1Q2UY09 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.13■□□□□ 0.49
COL28A1Q2UY09 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
COL28A1Q2UY09 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL28A1Q2UY09 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.13■□□□□ 0.49
COL28A1Q2UY09 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL28A1Q2UY09 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL28A1Q2UY09 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL28A1Q2UY09 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL28A1Q2UY09 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.13■□□□□ 0.49
COL28A1Q2UY09 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.13■□□□□ 0.49
COL28A1Q2UY09 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC18.13■□□□□ 0.49
COL28A1Q2UY09 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.13■□□□□ 0.49
COL28A1Q2UY09 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL28A1Q2UY09 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL28A1Q2UY09 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.13■□□□□ 0.49
COL28A1Q2UY09 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL28A1Q2UY09 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL28A1Q2UY09 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL28A1Q2UY09 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL28A1Q2UY09 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL28A1Q2UY09 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL28A1Q2UY09 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL28A1Q2UY09 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL28A1Q2UY09 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL28A1Q2UY09 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL28A1Q2UY09 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL28A1Q2UY09 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.12■□□□□ 0.49
COL28A1Q2UY09 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL28A1Q2UY09 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.12■□□□□ 0.49
COL28A1Q2UY09 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.12■□□□□ 0.49
COL28A1Q2UY09 SPDYE13P-201ENST00000445314 798 ntBASIC18.12■□□□□ 0.49
COL28A1Q2UY09 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL28A1Q2UY09 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.12■□□□□ 0.49
COL28A1Q2UY09 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL28A1Q2UY09 AL732292.2-201ENST00000609649 430 ntBASIC18.12■□□□□ 0.49
COL28A1Q2UY09 AC120114.3-201ENST00000611923 658 ntBASIC18.12■□□□□ 0.49
COL28A1Q2UY09 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL28A1Q2UY09 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.12■□□□□ 0.49
COL28A1Q2UY09 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL28A1Q2UY09 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL28A1Q2UY09 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.12■□□□□ 0.49
COL28A1Q2UY09 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 AL645929.1-201ENST00000420084 975 ntBASIC18.11■□□□□ 0.49
COL28A1Q2UY09 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 NUS1P1-201ENST00000446295 882 ntBASIC18.11■□□□□ 0.49
COL28A1Q2UY09 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 MIR3180-1-201ENST00000580374 94 ntBASIC18.11■□□□□ 0.49
COL28A1Q2UY09 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 MIR3180-3-201ENST00000584616 94 ntBASIC18.11■□□□□ 0.49
COL28A1Q2UY09 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.11■□□□□ 0.49
COL28A1Q2UY09 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.11■□□□□ 0.49
COL28A1Q2UY09 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms