Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 RPS2P55-201ENST00000397318 883 ntBASIC19.66■□□□□ 0.74
CDH6P55285 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.66■□□□□ 0.74
CDH6P55285 FAM207BP-201ENST00000447172 505 ntBASIC19.66■□□□□ 0.74
CDH6P55285 B3GAT3P1-201ENST00000471720 806 ntBASIC19.66■□□□□ 0.74
CDH6P55285 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CDH6P55285 AC107956.1-201ENST00000494359 873 ntBASIC19.66■□□□□ 0.74
CDH6P55285 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.66■□□□□ 0.74
CDH6P55285 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.66■□□□□ 0.74
CDH6P55285 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.66■□□□□ 0.74
CDH6P55285 AP001412.1-201ENST00000608405 714 ntBASIC19.66■□□□□ 0.74
CDH6P55285 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CDH6P55285 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.66■□□□□ 0.74
CDH6P55285 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.66■□□□□ 0.74
CDH6P55285 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
CDH6P55285 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CDH6P55285 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CDH6P55285 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.66■□□□□ 0.74
CDH6P55285 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CDH6P55285 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.66■□□□□ 0.74
CDH6P55285 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CDH6P55285 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CDH6P55285 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDH6P55285 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDH6P55285 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDH6P55285 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CDH6P55285 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.65■□□□□ 0.74
CDH6P55285 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDH6P55285 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.65■□□□□ 0.74
CDH6P55285 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CDH6P55285 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CDH6P55285 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.65■□□□□ 0.74
CDH6P55285 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.65■□□□□ 0.74
CDH6P55285 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.65■□□□□ 0.74
CDH6P55285 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDH6P55285 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDH6P55285 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDH6P55285 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.65■□□□□ 0.74
CDH6P55285 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.65■□□□□ 0.74
CDH6P55285 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDH6P55285 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDH6P55285 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDH6P55285 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CDH6P55285 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CDH6P55285 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CDH6P55285 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CDH6P55285 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CDH6P55285 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.74
CDH6P55285 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CDH6P55285 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19.64■□□□□ 0.73
CDH6P55285 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.64■□□□□ 0.73
CDH6P55285 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.64■□□□□ 0.73
CDH6P55285 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.64■□□□□ 0.73
CDH6P55285 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.64■□□□□ 0.73
CDH6P55285 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
CDH6P55285 AC233702.5-201ENST00000584107 538 ntBASIC19.64■□□□□ 0.73
CDH6P55285 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.64■□□□□ 0.73
CDH6P55285 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19.64■□□□□ 0.73
CDH6P55285 AP006294.2-201ENST00000641667 209 ntBASIC19.64■□□□□ 0.73
CDH6P55285 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CDH6P55285 FSCN1P1-201ENST00000568912 1481 ntBASIC19.64■□□□□ 0.73
CDH6P55285 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDH6P55285 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDH6P55285 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDH6P55285 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CDH6P55285 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC19.64■□□□□ 0.73
CDH6P55285 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDH6P55285 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CDH6P55285 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CDH6P55285 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CDH6P55285 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CDH6P55285 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CDH6P55285 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.63■□□□□ 0.73
CDH6P55285 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.63■□□□□ 0.73
CDH6P55285 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDH6P55285 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.63■□□□□ 0.73
CDH6P55285 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
CDH6P55285 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDH6P55285 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.63■□□□□ 0.73
CDH6P55285 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDH6P55285 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDH6P55285 MESTP1-201ENST00000404287 994 ntBASIC19.63■□□□□ 0.73
CDH6P55285 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CDH6P55285 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.63■□□□□ 0.73
CDH6P55285 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.63■□□□□ 0.73
CDH6P55285 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.63■□□□□ 0.73
CDH6P55285 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDH6P55285 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDH6P55285 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDH6P55285 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
CDH6P55285 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CDH6P55285 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDH6P55285 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.63■□□□□ 0.73
CDH6P55285 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
CDH6P55285 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDH6P55285 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDH6P55285 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDH6P55285 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
CDH6P55285 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDH6P55285 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.62■□□□□ 0.73
CDH6P55285 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms