Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CIITAP33076 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC21.28■■□□□ 1
CIITAP33076 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
CIITAP33076 AC008556.1-201ENST00000610908 2040 ntBASIC21.28■■□□□ 1
CIITAP33076 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CIITAP33076 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CIITAP33076 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC21.28■■□□□ 1
CIITAP33076 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC21.28■■□□□ 1
CIITAP33076 CD70-202ENST00000423145 881 ntTSL 2 BASIC21.28■■□□□ 1
CIITAP33076 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC21.28■■□□□ 1
CIITAP33076 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC21.28■■□□□ 1
CIITAP33076 NEK4P2-201ENST00000580004 1012 ntBASIC21.28■■□□□ 1
CIITAP33076 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC21.28■■□□□ 1
CIITAP33076 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC21.28■■□□□ 1
CIITAP33076 AC083906.6-201ENST00000641366 219 ntBASIC21.28■■□□□ 1
CIITAP33076 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC21.28■■□□□ 1
CIITAP33076 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC21.28■■□□□ 1
CIITAP33076 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.28■■□□□ 1
CIITAP33076 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CIITAP33076 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
CIITAP33076 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CIITAP33076 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC21.28■■□□□ 1
CIITAP33076 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC21.28■■□□□ 1
CIITAP33076 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC21.28■■□□□ 1
CIITAP33076 HEIH-201ENST00000623091 1652 ntBASIC21.28■■□□□ 1
CIITAP33076 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
CIITAP33076 USP39-202ENST00000409025 1946 ntTSL 5 BASIC21.27■■□□□ 1
CIITAP33076 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
CIITAP33076 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
CIITAP33076 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC21.27■■□□□ 1
CIITAP33076 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CIITAP33076 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CIITAP33076 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CIITAP33076 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC21.27■■□□□ 1
CIITAP33076 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CIITAP33076 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC21.27■■□□□ 1
CIITAP33076 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC21.27■■□□□ 1
CIITAP33076 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CIITAP33076 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC21.27■■□□□ 1
CIITAP33076 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CIITAP33076 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC21.27■■□□□ 1
CIITAP33076 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC21.27■■□□□ 1
CIITAP33076 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
CIITAP33076 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC21.27■□□□□ 0.99
CIITAP33076 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CIITAP33076 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC21.26■□□□□ 0.99
CIITAP33076 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
CIITAP33076 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CIITAP33076 AC117947.1-201ENST00000427448 529 ntBASIC21.26■□□□□ 0.99
CIITAP33076 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC21.26■□□□□ 0.99
CIITAP33076 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC21.26■□□□□ 0.99
CIITAP33076 AC009947.2-201ENST00000444014 672 ntBASIC21.26■□□□□ 0.99
CIITAP33076 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC21.26■□□□□ 0.99
CIITAP33076 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC21.26■□□□□ 0.99
CIITAP33076 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC21.26■□□□□ 0.99
CIITAP33076 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC21.26■□□□□ 0.99
CIITAP33076 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CIITAP33076 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.26■□□□□ 0.99
CIITAP33076 AC036111.1-201ENST00000533973 1582 ntBASIC21.26■□□□□ 0.99
CIITAP33076 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CIITAP33076 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CIITAP33076 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
CIITAP33076 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CIITAP33076 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CIITAP33076 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CIITAP33076 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CIITAP33076 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CIITAP33076 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CIITAP33076 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC21.26■□□□□ 0.99
CIITAP33076 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CIITAP33076 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CIITAP33076 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CIITAP33076 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CIITAP33076 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CIITAP33076 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CIITAP33076 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CIITAP33076 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CIITAP33076 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CIITAP33076 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CIITAP33076 ENSA-205ENST00000361532 792 ntTSL 2 BASIC21.25■□□□□ 0.99
CIITAP33076 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC21.25■□□□□ 0.99
CIITAP33076 MIR564-202ENST00000385049 94 ntBASIC21.25■□□□□ 0.99
CIITAP33076 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CIITAP33076 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
CIITAP33076 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
CIITAP33076 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC21.25■□□□□ 0.99
CIITAP33076 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC21.25■□□□□ 0.99
CIITAP33076 COX11P1-201ENST00000489116 835 ntBASIC21.25■□□□□ 0.99
CIITAP33076 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC21.25■□□□□ 0.99
CIITAP33076 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC21.25■□□□□ 0.99
CIITAP33076 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC21.25■□□□□ 0.99
CIITAP33076 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC21.25■□□□□ 0.99
CIITAP33076 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CIITAP33076 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC21.25■□□□□ 0.99
CIITAP33076 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CIITAP33076 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC21.25■□□□□ 0.99
CIITAP33076 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CIITAP33076 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CIITAP33076 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CIITAP33076 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms