Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX3O95343 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX3O95343 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX3O95343 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.48■□□□□ 0.55
SIX3O95343 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SIX3O95343 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX3O95343 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SIX3O95343 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX3O95343 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.48■□□□□ 0.55
SIX3O95343 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.48■□□□□ 0.55
SIX3O95343 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX3O95343 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX3O95343 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.48■□□□□ 0.55
SIX3O95343 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.48■□□□□ 0.55
SIX3O95343 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SIX3O95343 MIR4651-201ENST00000582622 73 ntBASIC18.48■□□□□ 0.55
SIX3O95343 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
SIX3O95343 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX3O95343 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX3O95343 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX3O95343 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
SIX3O95343 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.48■□□□□ 0.55
SIX3O95343 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.48■□□□□ 0.55
SIX3O95343 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
SIX3O95343 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SIX3O95343 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.48■□□□□ 0.55
SIX3O95343 AC135050.7-201ENST00000624508 2218 ntBASIC18.47■□□□□ 0.55
SIX3O95343 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.47■□□□□ 0.55
SIX3O95343 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
SIX3O95343 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
SIX3O95343 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SIX3O95343 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SIX3O95343 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SIX3O95343 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SIX3O95343 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX3O95343 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.47■□□□□ 0.55
SIX3O95343 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX3O95343 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX3O95343 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX3O95343 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SIX3O95343 POU5F1P3-201ENST00000428824 1078 ntBASIC18.47■□□□□ 0.55
SIX3O95343 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.47■□□□□ 0.55
SIX3O95343 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX3O95343 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.47■□□□□ 0.55
SIX3O95343 AL445675.2-201ENST00000620291 557 ntBASIC18.47■□□□□ 0.55
SIX3O95343 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX3O95343 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.47■□□□□ 0.55
SIX3O95343 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.47■□□□□ 0.55
SIX3O95343 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.47■□□□□ 0.55
SIX3O95343 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX3O95343 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.47■□□□□ 0.55
SIX3O95343 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX3O95343 KRT8P11-201ENST00000409686 1436 ntBASIC18.47■□□□□ 0.55
SIX3O95343 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.47■□□□□ 0.55
SIX3O95343 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
SIX3O95343 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX3O95343 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.47■□□□□ 0.55
SIX3O95343 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX3O95343 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX3O95343 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SIX3O95343 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
SIX3O95343 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX3O95343 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX3O95343 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.46■□□□□ 0.55
SIX3O95343 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX3O95343 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX3O95343 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.46■□□□□ 0.55
SIX3O95343 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SIX3O95343 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX3O95343 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SIX3O95343 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX3O95343 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.46■□□□□ 0.55
SIX3O95343 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX3O95343 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX3O95343 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.46■□□□□ 0.55
SIX3O95343 AC004980.1-204ENST00000429707 299 ntBASIC18.46■□□□□ 0.55
SIX3O95343 AC128676.1-201ENST00000454392 318 ntBASIC18.46■□□□□ 0.55
SIX3O95343 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.46■□□□□ 0.55
SIX3O95343 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.46■□□□□ 0.55
SIX3O95343 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.46■□□□□ 0.55
SIX3O95343 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.46■□□□□ 0.55
SIX3O95343 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.46■□□□□ 0.55
SIX3O95343 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.46■□□□□ 0.55
SIX3O95343 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SIX3O95343 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX3O95343 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.46■□□□□ 0.55
SIX3O95343 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX3O95343 AC018470.1-201ENST00000624790 3129 ntBASIC18.46■□□□□ 0.55
SIX3O95343 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX3O95343 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SIX3O95343 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX3O95343 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
SIX3O95343 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX3O95343 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SIX3O95343 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX3O95343 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.46■□□□□ 0.55
SIX3O95343 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.54
SIX3O95343 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
SIX3O95343 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX3O95343 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms