Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC18.63■□□□□ 0.57
SNX3O60493 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SNX3O60493 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SNX3O60493 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.63■□□□□ 0.57
SNX3O60493 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
SNX3O60493 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SNX3O60493 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SNX3O60493 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SNX3O60493 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SNX3O60493 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SNX3O60493 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SNX3O60493 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SNX3O60493 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SNX3O60493 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SNX3O60493 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SNX3O60493 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SNX3O60493 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SNX3O60493 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SNX3O60493 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.62■□□□□ 0.57
SNX3O60493 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SNX3O60493 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.62■□□□□ 0.57
SNX3O60493 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SNX3O60493 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SNX3O60493 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SNX3O60493 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SNX3O60493 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.62■□□□□ 0.57
SNX3O60493 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.62■□□□□ 0.57
SNX3O60493 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.62■□□□□ 0.57
SNX3O60493 CYP2T3P-201ENST00000601990 817 ntBASIC18.62■□□□□ 0.57
SNX3O60493 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SNX3O60493 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SNX3O60493 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.62■□□□□ 0.57
SNX3O60493 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
SNX3O60493 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SNX3O60493 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SNX3O60493 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.62■□□□□ 0.57
SNX3O60493 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.62■□□□□ 0.57
SNX3O60493 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SNX3O60493 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
SNX3O60493 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SNX3O60493 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SNX3O60493 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SNX3O60493 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SNX3O60493 AL499627.1-201ENST00000569373 2188 ntBASIC18.61■□□□□ 0.57
SNX3O60493 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SNX3O60493 AC093677.2-201ENST00000600169 1863 ntBASIC18.61■□□□□ 0.57
SNX3O60493 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SNX3O60493 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SNX3O60493 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.61■□□□□ 0.57
SNX3O60493 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SNX3O60493 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SNX3O60493 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.61■□□□□ 0.57
SNX3O60493 KRT19P1-201ENST00000405746 1186 ntBASIC18.61■□□□□ 0.57
SNX3O60493 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC18.61■□□□□ 0.57
SNX3O60493 AC123595.1-201ENST00000440769 1046 ntBASIC18.61■□□□□ 0.57
SNX3O60493 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.61■□□□□ 0.57
SNX3O60493 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.61■□□□□ 0.57
SNX3O60493 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
SNX3O60493 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.61■□□□□ 0.57
SNX3O60493 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.61■□□□□ 0.57
SNX3O60493 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
SNX3O60493 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNX3O60493 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.6■□□□□ 0.57
SNX3O60493 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNX3O60493 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.6■□□□□ 0.57
SNX3O60493 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.6■□□□□ 0.57
SNX3O60493 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNX3O60493 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC18.6■□□□□ 0.57
SNX3O60493 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.6■□□□□ 0.57
SNX3O60493 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC18.6■□□□□ 0.57
SNX3O60493 AC013268.1-206ENST00000638368 961 ntBASIC18.6■□□□□ 0.57
SNX3O60493 AC112229.1-201ENST00000639295 961 ntBASIC18.6■□□□□ 0.57
SNX3O60493 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SNX3O60493 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SNX3O60493 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SNX3O60493 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNX3O60493 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.6■□□□□ 0.57
SNX3O60493 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SNX3O60493 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNX3O60493 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNX3O60493 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.6■□□□□ 0.57
SNX3O60493 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNX3O60493 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNX3O60493 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
SNX3O60493 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
SNX3O60493 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.59■□□□□ 0.57
SNX3O60493 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNX3O60493 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SNX3O60493 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.59■□□□□ 0.57
SNX3O60493 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNX3O60493 KRT8P8-201ENST00000434750 1448 ntBASIC18.59■□□□□ 0.57
SNX3O60493 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SNX3O60493 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNX3O60493 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.59■□□□□ 0.57
SNX3O60493 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNX3O60493 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.59■□□□□ 0.57
SNX3O60493 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNX3O60493 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC18.59■□□□□ 0.57
SNX3O60493 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.59■□□□□ 0.57
SNX3O60493 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms