Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TMX2-CTNND1H3BSU7 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
TMX2-CTNND1H3BSU7 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TMX2-CTNND1H3BSU7 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TMX2-CTNND1H3BSU7 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TMX2-CTNND1H3BSU7 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
TMX2-CTNND1H3BSU7 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TMX2-CTNND1H3BSU7 YBX1P2-201ENST00000489612 999 ntBASIC18.55■□□□□ 0.56
TMX2-CTNND1H3BSU7 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.55■□□□□ 0.56
TMX2-CTNND1H3BSU7 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.55■□□□□ 0.56
TMX2-CTNND1H3BSU7 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.55■□□□□ 0.56
TMX2-CTNND1H3BSU7 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.55■□□□□ 0.56
TMX2-CTNND1H3BSU7 AC141257.4-201ENST00000634557 245 ntBASIC18.55■□□□□ 0.56
TMX2-CTNND1H3BSU7 AC136944.6-201ENST00000634818 245 ntBASIC18.55■□□□□ 0.56
TMX2-CTNND1H3BSU7 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.55■□□□□ 0.56
TMX2-CTNND1H3BSU7 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TMX2-CTNND1H3BSU7 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
TMX2-CTNND1H3BSU7 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
TMX2-CTNND1H3BSU7 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TMX2-CTNND1H3BSU7 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TMX2-CTNND1H3BSU7 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 HOMER2P1-201ENST00000455653 964 ntBASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 AC140113.3-201ENST00000605663 199 ntBASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
TMX2-CTNND1H3BSU7 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TMX2-CTNND1H3BSU7 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
TMX2-CTNND1H3BSU7 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.53■□□□□ 0.56
TMX2-CTNND1H3BSU7 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC18.53■□□□□ 0.56
TMX2-CTNND1H3BSU7 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
TMX2-CTNND1H3BSU7 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TMX2-CTNND1H3BSU7 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TMX2-CTNND1H3BSU7 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TMX2-CTNND1H3BSU7 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TMX2-CTNND1H3BSU7 UPK3BP1-201ENST00000428678 509 ntBASIC18.53■□□□□ 0.56
TMX2-CTNND1H3BSU7 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TMX2-CTNND1H3BSU7 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.53■□□□□ 0.56
TMX2-CTNND1H3BSU7 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TMX2-CTNND1H3BSU7 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.53■□□□□ 0.56
TMX2-CTNND1H3BSU7 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.53■□□□□ 0.56
TMX2-CTNND1H3BSU7 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.53■□□□□ 0.56
TMX2-CTNND1H3BSU7 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
TMX2-CTNND1H3BSU7 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
TMX2-CTNND1H3BSU7 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.53■□□□□ 0.56
TMX2-CTNND1H3BSU7 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 BX119927.1-201ENST00000636596 1552 ntBASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 ANKRD20A18P-201ENST00000359341 492 ntBASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 MYC-208ENST00000641036 567 ntBASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.52■□□□□ 0.56
TMX2-CTNND1H3BSU7 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
TMX2-CTNND1H3BSU7 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
TMX2-CTNND1H3BSU7 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.52■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms