Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC3.33□□□□□ -1.88
RFX1P22670 AC069114.2-201ENST00000604699 304 ntBASIC3.33□□□□□ -1.88
RFX1P22670 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.33□□□□□ -1.88
RFX1P22670 SNORA71.1-201ENST00000364523 117 ntBASIC3.32□□□□□ -1.88
RFX1P22670 MIR624-201ENST00000385217 97 ntBASIC3.32□□□□□ -1.88
RFX1P22670 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.32□□□□□ -1.88
RFX1P22670 AC245047.3-201ENST00000429428 127 ntBASIC3.32□□□□□ -1.88
RFX1P22670 SNORA18.4-201ENST00000516440 124 ntBASIC3.32□□□□□ -1.88
RFX1P22670 RNU6-659P-201ENST00000516454 104 ntBASIC3.32□□□□□ -1.88
RFX1P22670 Y_RNA.686-201ENST00000516548 134 ntBASIC3.32□□□□□ -1.88
RFX1P22670 RNA5SP380-201ENST00000517190 98 ntBASIC3.32□□□□□ -1.88
RFX1P22670 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.32□□□□□ -1.88
RFX1P22670 Y_RNA.757-201ENST00000578934 114 ntBASIC3.32□□□□□ -1.88
RFX1P22670 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.32□□□□□ -1.88
RFX1P22670 5S_rRNA.11-201ENST00000618635 84 ntBASIC3.32□□□□□ -1.88
RFX1P22670 AL136360.1-201ENST00000503377 1900 ntBASIC3.32□□□□□ -1.88
RFX1P22670 AC007336.1-201ENST00000576365 3828 ntBASIC3.32□□□□□ -1.88
RFX1P22670 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.31□□□□□ -1.88
RFX1P22670 SNORD61-201ENST00000384252 73 ntBASIC3.31□□□□□ -1.88
RFX1P22670 MIR1283-2-201ENST00000408621 87 ntBASIC3.31□□□□□ -1.88
RFX1P22670 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.31□□□□□ -1.88
RFX1P22670 AL606517.2-201ENST00000442855 241 ntBASIC3.31□□□□□ -1.88
RFX1P22670 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC3.31□□□□□ -1.88
RFX1P22670 Y_RNA.692-201ENST00000516627 105 ntBASIC3.31□□□□□ -1.88
RFX1P22670 AC084364.2-201ENST00000546924 395 ntBASIC3.31□□□□□ -1.88
RFX1P22670 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC3.31□□□□□ -1.88
RFX1P22670 AC093831.2-201ENST00000624393 3427 ntBASIC3.31□□□□□ -1.88
RFX1P22670 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.31□□□□□ -1.88
RFX1P22670 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
RFX1P22670 AC073325.2-201ENST00000339545 159 ntBASIC3.3□□□□□ -1.88
RFX1P22670 RNU6-888P-201ENST00000363010 101 ntBASIC3.3□□□□□ -1.88
RFX1P22670 Y_RNA.273-201ENST00000364703 102 ntBASIC3.3□□□□□ -1.88
RFX1P22670 RNU11-3P-201ENST00000391111 133 ntBASIC3.3□□□□□ -1.88
RFX1P22670 RNA5SP127-201ENST00000411051 133 ntBASIC3.3□□□□□ -1.88
RFX1P22670 RN7SL20P-201ENST00000488827 297 ntBASIC3.3□□□□□ -1.88
RFX1P22670 RN7SL633P-201ENST00000488974 297 ntBASIC3.3□□□□□ -1.88
RFX1P22670 AC008885.1-201ENST00000514930 301 ntBASIC3.3□□□□□ -1.88
RFX1P22670 Y_RNA.666-201ENST00000516187 112 ntBASIC3.3□□□□□ -1.88
RFX1P22670 AL033523.1-201ENST00000605153 153 ntBASIC3.3□□□□□ -1.88
RFX1P22670 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC3.3□□□□□ -1.88
RFX1P22670 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC3.29□□□□□ -1.88
RFX1P22670 SNORD68-201ENST00000363214 84 ntBASIC3.29□□□□□ -1.88
RFX1P22670 Y_RNA.294-201ENST00000364916 102 ntBASIC3.29□□□□□ -1.88
RFX1P22670 RNU6-1292P-201ENST00000383856 107 ntBASIC3.29□□□□□ -1.88
RFX1P22670 SNORA1-201ENST00000384107 130 ntBASIC3.29□□□□□ -1.88
RFX1P22670 RNU4ATAC16P-201ENST00000408512 126 ntBASIC3.29□□□□□ -1.88
RFX1P22670 GTF3AP2-201ENST00000557014 266 ntBASIC3.29□□□□□ -1.88
RFX1P22670 MIR3121-201ENST00000579680 77 ntBASIC3.29□□□□□ -1.88
RFX1P22670 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC3.29□□□□□ -1.88
RFX1P22670 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
RFX1P22670 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
RFX1P22670 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC3.28□□□□□ -1.88
RFX1P22670 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
RFX1P22670 SNORD18B-201ENST00000365659 72 ntBASIC3.28□□□□□ -1.88
RFX1P22670 MIR518A2-201ENST00000384966 87 ntBASIC3.28□□□□□ -1.88
RFX1P22670 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
RFX1P22670 RNA5SP109-201ENST00000391010 116 ntBASIC3.28□□□□□ -1.88
RFX1P22670 HMGN2P39-201ENST00000398005 273 ntBASIC3.28□□□□□ -1.88
RFX1P22670 AL603914.1-201ENST00000401964 204 ntBASIC3.28□□□□□ -1.88
RFX1P22670 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.28□□□□□ -1.88
RFX1P22670 EEF1A1P41-201ENST00000414667 207 ntBASIC3.28□□□□□ -1.88
RFX1P22670 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.28□□□□□ -1.88
RFX1P22670 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.28□□□□□ -1.88
RFX1P22670 RNA5SP356-201ENST00000515972 94 ntBASIC3.28□□□□□ -1.88
RFX1P22670 RNU1-104P-201ENST00000517280 175 ntBASIC3.28□□□□□ -1.88
RFX1P22670 RNU2-60P-201ENST00000517290 128 ntBASIC3.28□□□□□ -1.88
RFX1P22670 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.28□□□□□ -1.88
RFX1P22670 MIR3129-201ENST00000581095 76 ntBASIC3.28□□□□□ -1.88
RFX1P22670 UBL5P2-201ENST00000583788 219 ntBASIC3.28□□□□□ -1.88
RFX1P22670 MIR4658-201ENST00000584344 65 ntBASIC3.28□□□□□ -1.88
RFX1P22670 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC3.28□□□□□ -1.88
RFX1P22670 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
RFX1P22670 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
RFX1P22670 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
RFX1P22670 Y_RNA.353-201ENST00000365440 108 ntBASIC3.27□□□□□ -1.89
RFX1P22670 MIR891A-201ENST00000401237 79 ntBASIC3.27□□□□□ -1.89
RFX1P22670 AC096725.1-201ENST00000514266 313 ntBASIC3.27□□□□□ -1.89
RFX1P22670 RN7SKP179-201ENST00000516126 217 ntBASIC3.27□□□□□ -1.89
RFX1P22670 RNU6-693P-201ENST00000516134 107 ntBASIC3.27□□□□□ -1.89
RFX1P22670 AC090049.2-201ENST00000550377 109 ntBASIC3.27□□□□□ -1.89
RFX1P22670 SNORA28-201ENST00000606769 126 ntBASIC3.27□□□□□ -1.89
RFX1P22670 AC006441.5-201ENST00000612680 209 ntBASIC3.27□□□□□ -1.89
RFX1P22670 MIR8054-201ENST00000620877 86 ntBASIC3.27□□□□□ -1.89
RFX1P22670 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
RFX1P22670 AP006437.1-201ENST00000641440 3685 ntBASIC3.27□□□□□ -1.89
RFX1P22670 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
RFX1P22670 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
RFX1P22670 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
RFX1P22670 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
RFX1P22670 Y_RNA.563-201ENST00000384707 108 ntBASIC3.26□□□□□ -1.89
RFX1P22670 SNORD67-201ENST00000390833 111 ntBASIC3.26□□□□□ -1.89
RFX1P22670 RNU6-440P-201ENST00000390882 105 ntBASIC3.26□□□□□ -1.89
RFX1P22670 RNA5SP508-201ENST00000411327 119 ntBASIC3.26□□□□□ -1.89
RFX1P22670 SNRPGP13-201ENST00000442212 177 ntBASIC3.26□□□□□ -1.89
RFX1P22670 RNU7-107P-201ENST00000459121 61 ntBASIC3.26□□□□□ -1.89
RFX1P22670 RNU6-1270P-201ENST00000517128 108 ntBASIC3.26□□□□□ -1.89
RFX1P22670 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.26□□□□□ -1.89
RFX1P22670 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.26□□□□□ -1.89
RFX1P22670 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
RFX1P22670 RNU6-235P-201ENST00000362644 107 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms