Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
USHBP1Q8N6Y0 AL356292.1-201ENST00000283110 373 ntBASIC3.11□□□□□ -1.91
USHBP1Q8N6Y0 Y_RNA.273-201ENST00000364703 102 ntBASIC3.11□□□□□ -1.91
USHBP1Q8N6Y0 Y_RNA.353-201ENST00000365440 108 ntBASIC3.11□□□□□ -1.91
USHBP1Q8N6Y0 SNORD116-14-201ENST00000383894 92 ntBASIC3.11□□□□□ -1.91
USHBP1Q8N6Y0 SNORD116-17-201ENST00000383929 92 ntBASIC3.11□□□□□ -1.91
USHBP1Q8N6Y0 SNORD116-15-201ENST00000384445 92 ntBASIC3.11□□□□□ -1.91
USHBP1Q8N6Y0 RNU6-768P-201ENST00000384683 107 ntBASIC3.11□□□□□ -1.91
USHBP1Q8N6Y0 SNORD116-19-201ENST00000384729 92 ntBASIC3.11□□□□□ -1.91
USHBP1Q8N6Y0 RNA5SP496-201ENST00000391240 109 ntBASIC3.11□□□□□ -1.91
USHBP1Q8N6Y0 MIR1278-201ENST00000408753 81 ntBASIC3.11□□□□□ -1.91
USHBP1Q8N6Y0 AL356320.1-201ENST00000429616 163 ntBASIC3.11□□□□□ -1.91
USHBP1Q8N6Y0 SNRPGP8-201ENST00000454064 226 ntBASIC3.11□□□□□ -1.91
USHBP1Q8N6Y0 RPL23AP54-201ENST00000495129 419 ntBASIC3.11□□□□□ -1.91
USHBP1Q8N6Y0 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC3.11□□□□□ -1.91
USHBP1Q8N6Y0 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC3.11□□□□□ -1.91
USHBP1Q8N6Y0 RNU6-1333P-201ENST00000516162 93 ntBASIC3.11□□□□□ -1.91
USHBP1Q8N6Y0 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC3.11□□□□□ -1.91
USHBP1Q8N6Y0 MIR5092-201ENST00000583139 88 ntBASIC3.11□□□□□ -1.91
USHBP1Q8N6Y0 AC006435.5-201ENST00000624486 112 ntBASIC3.11□□□□□ -1.91
USHBP1Q8N6Y0 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.11□□□□□ -1.91
USHBP1Q8N6Y0 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
USHBP1Q8N6Y0 Z82209.1-201ENST00000422141 2135 ntBASIC3.1□□□□□ -1.91
USHBP1Q8N6Y0 RNU6-674P-201ENST00000363831 107 ntBASIC3.1□□□□□ -1.91
USHBP1Q8N6Y0 RNU6-438P-201ENST00000365561 103 ntBASIC3.1□□□□□ -1.91
USHBP1Q8N6Y0 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
USHBP1Q8N6Y0 AL512604.1-201ENST00000404812 257 ntBASIC3.1□□□□□ -1.91
USHBP1Q8N6Y0 HMGN2P3-201ENST00000433603 273 ntBASIC3.1□□□□□ -1.91
USHBP1Q8N6Y0 HMGN2P5-201ENST00000436882 273 ntBASIC3.1□□□□□ -1.91
USHBP1Q8N6Y0 AC018634.1-201ENST00000437554 401 ntBASIC3.1□□□□□ -1.91
USHBP1Q8N6Y0 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC3.1□□□□□ -1.91
USHBP1Q8N6Y0 RNU6-437P-201ENST00000459408 95 ntBASIC3.1□□□□□ -1.91
USHBP1Q8N6Y0 AC092991.1-201ENST00000477176 376 ntBASIC3.1□□□□□ -1.91
USHBP1Q8N6Y0 RNA5SP76-201ENST00000516277 87 ntBASIC3.1□□□□□ -1.91
USHBP1Q8N6Y0 RNU6-1234P-201ENST00000516877 103 ntBASIC3.1□□□□□ -1.91
USHBP1Q8N6Y0 AC025647.1-201ENST00000517879 253 ntBASIC3.1□□□□□ -1.91
USHBP1Q8N6Y0 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.1□□□□□ -1.91
USHBP1Q8N6Y0 AC027419.1-201ENST00000522976 328 ntBASIC3.1□□□□□ -1.91
USHBP1Q8N6Y0 AC018630.3-201ENST00000542637 96 ntBASIC3.1□□□□□ -1.91
USHBP1Q8N6Y0 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
USHBP1Q8N6Y0 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC3.1□□□□□ -1.91
USHBP1Q8N6Y0 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
USHBP1Q8N6Y0 5S_rRNA.13-201ENST00000622298 123 ntBASIC3.1□□□□□ -1.91
USHBP1Q8N6Y0 AP001340.1-201ENST00000624405 217 ntBASIC3.1□□□□□ -1.91
USHBP1Q8N6Y0 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
USHBP1Q8N6Y0 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
USHBP1Q8N6Y0 Y_RNA.393-201ENST00000383936 102 ntBASIC3.09□□□□□ -1.91
USHBP1Q8N6Y0 RNU6-418P-201ENST00000384035 107 ntBASIC3.09□□□□□ -1.91
USHBP1Q8N6Y0 RNU6-80P-201ENST00000384195 107 ntBASIC3.09□□□□□ -1.91
USHBP1Q8N6Y0 SNORD20-201ENST00000384550 80 ntBASIC3.09□□□□□ -1.91
USHBP1Q8N6Y0 SNORA79-201ENST00000408376 140 ntBASIC3.09□□□□□ -1.91
USHBP1Q8N6Y0 RNU6-588P-201ENST00000410281 105 ntBASIC3.09□□□□□ -1.91
USHBP1Q8N6Y0 MICF-203ENST00000432679 129 ntBASIC3.09□□□□□ -1.91
USHBP1Q8N6Y0 AC016925.1-201ENST00000458303 298 ntBASIC3.09□□□□□ -1.91
USHBP1Q8N6Y0 AC011603.4-201ENST00000611325 277 ntBASIC3.09□□□□□ -1.91
USHBP1Q8N6Y0 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
USHBP1Q8N6Y0 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
USHBP1Q8N6Y0 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
USHBP1Q8N6Y0 RNU1-72P-201ENST00000362976 153 ntBASIC3.08□□□□□ -1.92
USHBP1Q8N6Y0 RNU6-1180P-201ENST00000364935 107 ntBASIC3.08□□□□□ -1.92
USHBP1Q8N6Y0 RNU6-1240P-201ENST00000365155 104 ntBASIC3.08□□□□□ -1.92
USHBP1Q8N6Y0 RNU6-1235P-201ENST00000384559 107 ntBASIC3.08□□□□□ -1.92
USHBP1Q8N6Y0 SNORD88.1-201ENST00000408684 91 ntBASIC3.08□□□□□ -1.92
USHBP1Q8N6Y0 Y_RNA.622-201ENST00000411091 108 ntBASIC3.08□□□□□ -1.92
USHBP1Q8N6Y0 AC008134.1-201ENST00000420943 193 ntBASIC3.08□□□□□ -1.92
USHBP1Q8N6Y0 AL591806.2-201ENST00000433122 173 ntBASIC3.08□□□□□ -1.92
USHBP1Q8N6Y0 RPS15AP28-201ENST00000435088 386 ntBASIC3.08□□□□□ -1.92
USHBP1Q8N6Y0 RNU6-498P-201ENST00000459468 107 ntBASIC3.08□□□□□ -1.92
USHBP1Q8N6Y0 AC010531.2-201ENST00000465012 153 ntBASIC3.08□□□□□ -1.92
USHBP1Q8N6Y0 RNU4-57P-201ENST00000515980 135 ntBASIC3.08□□□□□ -1.92
USHBP1Q8N6Y0 RNU6-63P-201ENST00000516690 95 ntBASIC3.08□□□□□ -1.92
USHBP1Q8N6Y0 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.08□□□□□ -1.92
USHBP1Q8N6Y0 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
USHBP1Q8N6Y0 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
USHBP1Q8N6Y0 SNORD45.3-201ENST00000363836 72 ntBASIC3.07□□□□□ -1.92
USHBP1Q8N6Y0 RNU4-13P-201ENST00000364019 141 ntBASIC3.07□□□□□ -1.92
USHBP1Q8N6Y0 RNU4-41P-201ENST00000364426 143 ntBASIC3.07□□□□□ -1.92
USHBP1Q8N6Y0 SNORD21-201ENST00000383953 95 ntBASIC3.07□□□□□ -1.92
USHBP1Q8N6Y0 SNORA67.3-201ENST00000384366 140 ntBASIC3.07□□□□□ -1.92
USHBP1Q8N6Y0 SNORA64-201ENST00000384674 134 ntBASIC3.07□□□□□ -1.92
USHBP1Q8N6Y0 Y_RNA.587-201ENST00000391210 103 ntBASIC3.07□□□□□ -1.92
USHBP1Q8N6Y0 U6atac.2-201ENST00000408644 118 ntBASIC3.07□□□□□ -1.92
USHBP1Q8N6Y0 RNA5SP511-201ENST00000410487 115 ntBASIC3.07□□□□□ -1.92
USHBP1Q8N6Y0 RN7SKP101-201ENST00000411376 320 ntBASIC3.07□□□□□ -1.92
USHBP1Q8N6Y0 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC3.07□□□□□ -1.92
USHBP1Q8N6Y0 HMGN2P18-201ENST00000450680 270 ntBASIC3.07□□□□□ -1.92
USHBP1Q8N6Y0 SEM1P1-201ENST00000506694 209 ntBASIC3.07□□□□□ -1.92
USHBP1Q8N6Y0 RNU2-56P-201ENST00000516826 190 ntBASIC3.07□□□□□ -1.92
USHBP1Q8N6Y0 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.07□□□□□ -1.92
USHBP1Q8N6Y0 AP001328.1-201ENST00000528550 176 ntBASIC3.07□□□□□ -1.92
USHBP1Q8N6Y0 MIR378D2-201ENST00000580636 98 ntBASIC3.07□□□□□ -1.92
USHBP1Q8N6Y0 AL031274.2-201ENST00000599419 203 ntBASIC3.07□□□□□ -1.92
USHBP1Q8N6Y0 MIR6873-201ENST00000622788 63 ntBASIC3.07□□□□□ -1.92
USHBP1Q8N6Y0 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
USHBP1Q8N6Y0 RNU6-460P-201ENST00000391158 108 ntBASIC3.06□□□□□ -1.92
USHBP1Q8N6Y0 SNORA75.5-201ENST00000391291 81 ntBASIC3.06□□□□□ -1.92
USHBP1Q8N6Y0 AL023284.1-201ENST00000403956 276 ntBASIC3.06□□□□□ -1.92
USHBP1Q8N6Y0 RNA5SP344-201ENST00000411081 104 ntBASIC3.06□□□□□ -1.92
USHBP1Q8N6Y0 RNU2-55P-201ENST00000411146 174 ntBASIC3.06□□□□□ -1.92
USHBP1Q8N6Y0 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms