Protein–RNA interactions for Protein: Q9UJU5

FOXD3, Forkhead box protein D3, humanhuman

Predicted RBP Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXD3Q9UJU5 Y_RNA.690-201ENST00000516603 95 ntBASIC3.19□□□□□ -1.9
FOXD3Q9UJU5 AC007751.1-201ENST00000529260 376 ntBASIC3.19□□□□□ -1.9
FOXD3Q9UJU5 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.19□□□□□ -1.9
FOXD3Q9UJU5 MIR3922-201ENST00000585192 84 ntBASIC3.19□□□□□ -1.9
FOXD3Q9UJU5 RNVU1-4-201ENST00000612985 164 ntBASIC3.19□□□□□ -1.9
FOXD3Q9UJU5 U6.108-201ENST00000637764 58 ntBASIC3.19□□□□□ -1.9
FOXD3Q9UJU5 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.19□□□□□ -1.9
FOXD3Q9UJU5 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
FOXD3Q9UJU5 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
FOXD3Q9UJU5 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
FOXD3Q9UJU5 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
FOXD3Q9UJU5 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
FOXD3Q9UJU5 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
FOXD3Q9UJU5 Y_RNA.114-201ENST00000363265 113 ntBASIC3.18□□□□□ -1.9
FOXD3Q9UJU5 SNORD24-201ENST00000383884 75 ntBASIC3.18□□□□□ -1.9
FOXD3Q9UJU5 RNVU1-14-201ENST00000384770 164 ntBASIC3.18□□□□□ -1.9
FOXD3Q9UJU5 RNA5SP323-201ENST00000391094 133 ntBASIC3.18□□□□□ -1.9
FOXD3Q9UJU5 MIR891A-201ENST00000401237 79 ntBASIC3.18□□□□□ -1.9
FOXD3Q9UJU5 CST2P1-201ENST00000425770 87 ntBASIC3.18□□□□□ -1.9
FOXD3Q9UJU5 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.18□□□□□ -1.9
FOXD3Q9UJU5 MTATP6P21-201ENST00000440681 189 ntBASIC3.18□□□□□ -1.9
FOXD3Q9UJU5 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXD3Q9UJU5 AC008507.4-201ENST00000585464 127 ntBASIC3.18□□□□□ -1.9
FOXD3Q9UJU5 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.18□□□□□ -1.9
FOXD3Q9UJU5 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.18□□□□□ -1.9
FOXD3Q9UJU5 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.18□□□□□ -1.9
FOXD3Q9UJU5 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXD3Q9UJU5 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXD3Q9UJU5 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
FOXD3Q9UJU5 MAPK10-266ENST00000641066 6555 ntBASIC3.17□□□□□ -1.9
FOXD3Q9UJU5 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
FOXD3Q9UJU5 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
FOXD3Q9UJU5 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
FOXD3Q9UJU5 Y_RNA.52-201ENST00000362760 96 ntBASIC3.17□□□□□ -1.9
FOXD3Q9UJU5 RNU1-33P-201ENST00000364249 162 ntBASIC3.17□□□□□ -1.9
FOXD3Q9UJU5 RNU6-1292P-201ENST00000383856 107 ntBASIC3.17□□□□□ -1.9
FOXD3Q9UJU5 Y_RNA.525-201ENST00000384570 113 ntBASIC3.17□□□□□ -1.9
FOXD3Q9UJU5 MIR184-201ENST00000384962 84 ntBASIC3.17□□□□□ -1.9
FOXD3Q9UJU5 AL117342.1-201ENST00000404861 406 ntBASIC3.17□□□□□ -1.9
FOXD3Q9UJU5 RPL21P10-201ENST00000463521 490 ntBASIC3.17□□□□□ -1.9
FOXD3Q9UJU5 RNU1-104P-201ENST00000517280 175 ntBASIC3.17□□□□□ -1.9
FOXD3Q9UJU5 RNU2-60P-201ENST00000517290 128 ntBASIC3.17□□□□□ -1.9
FOXD3Q9UJU5 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.17□□□□□ -1.9
FOXD3Q9UJU5 AP002004.2-201ENST00000531656 154 ntBASIC3.17□□□□□ -1.9
FOXD3Q9UJU5 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC3.17□□□□□ -1.9
FOXD3Q9UJU5 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
FOXD3Q9UJU5 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
FOXD3Q9UJU5 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.17□□□□□ -1.9
FOXD3Q9UJU5 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
FOXD3Q9UJU5 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
FOXD3Q9UJU5 SNORD114-6-201ENST00000364393 72 ntBASIC3.16□□□□□ -1.9
FOXD3Q9UJU5 Y_RNA.267-201ENST00000364679 109 ntBASIC3.16□□□□□ -1.9
FOXD3Q9UJU5 RN7SKP111-201ENST00000410349 271 ntBASIC3.16□□□□□ -1.9
FOXD3Q9UJU5 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC3.16□□□□□ -1.9
FOXD3Q9UJU5 AL445687.1-201ENST00000439946 251 ntBASIC3.16□□□□□ -1.9
FOXD3Q9UJU5 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC3.16□□□□□ -1.9
FOXD3Q9UJU5 YWHAEP4-201ENST00000505390 198 ntBASIC3.16□□□□□ -1.9
FOXD3Q9UJU5 AC133485.4-201ENST00000561835 220 ntBASIC3.16□□□□□ -1.9
FOXD3Q9UJU5 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.16□□□□□ -1.9
FOXD3Q9UJU5 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.16□□□□□ -1.9
FOXD3Q9UJU5 AC138907.4-201ENST00000570107 226 ntBASIC3.16□□□□□ -1.9
FOXD3Q9UJU5 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.16□□□□□ -1.9
FOXD3Q9UJU5 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
FOXD3Q9UJU5 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
FOXD3Q9UJU5 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.15□□□□□ -1.9
FOXD3Q9UJU5 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC3.15□□□□□ -1.9
FOXD3Q9UJU5 RNU6-888P-201ENST00000363010 101 ntBASIC3.15□□□□□ -1.91
FOXD3Q9UJU5 SNORA8-201ENST00000384574 139 ntBASIC3.15□□□□□ -1.91
FOXD3Q9UJU5 RNU6-1072P-201ENST00000384703 107 ntBASIC3.15□□□□□ -1.91
FOXD3Q9UJU5 RNU6-443P-201ENST00000384780 107 ntBASIC3.15□□□□□ -1.91
FOXD3Q9UJU5 RPS29P31-201ENST00000446147 164 ntBASIC3.15□□□□□ -1.91
FOXD3Q9UJU5 RN7SL594P-201ENST00000470590 287 ntBASIC3.15□□□□□ -1.91
FOXD3Q9UJU5 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.15□□□□□ -1.91
FOXD3Q9UJU5 CYCSP26-201ENST00000534107 320 ntBASIC3.15□□□□□ -1.91
FOXD3Q9UJU5 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.15□□□□□ -1.91
FOXD3Q9UJU5 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.15□□□□□ -1.91
FOXD3Q9UJU5 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
FOXD3Q9UJU5 MFSD8-233ENST00000641482 4860 ntBASIC3.15□□□□□ -1.91
FOXD3Q9UJU5 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXD3Q9UJU5 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
FOXD3Q9UJU5 FAM35CP-201ENST00000554755 2470 ntBASIC3.14□□□□□ -1.91
FOXD3Q9UJU5 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
FOXD3Q9UJU5 MIR126-201ENST00000362291 85 ntBASIC3.14□□□□□ -1.91
FOXD3Q9UJU5 RNU6-153P-201ENST00000364422 104 ntBASIC3.14□□□□□ -1.91
FOXD3Q9UJU5 MIR627-201ENST00000384979 97 ntBASIC3.14□□□□□ -1.91
FOXD3Q9UJU5 SNORA12.1-201ENST00000390873 148 ntBASIC3.14□□□□□ -1.91
FOXD3Q9UJU5 SCARNA13-201ENST00000516672 275 ntBASIC3.14□□□□□ -1.91
FOXD3Q9UJU5 SNORA70.18-201ENST00000516696 98 ntBASIC3.14□□□□□ -1.91
FOXD3Q9UJU5 MIR4738-201ENST00000579134 87 ntBASIC3.14□□□□□ -1.91
FOXD3Q9UJU5 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
FOXD3Q9UJU5 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
FOXD3Q9UJU5 AC068647.1-201ENST00000489539 2265 ntBASIC3.13□□□□□ -1.91
FOXD3Q9UJU5 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
FOXD3Q9UJU5 SNORA38.1-201ENST00000364172 131 ntBASIC3.13□□□□□ -1.91
FOXD3Q9UJU5 SNORA40.5-201ENST00000391061 128 ntBASIC3.13□□□□□ -1.91
FOXD3Q9UJU5 MIR1262-201ENST00000408276 93 ntBASIC3.13□□□□□ -1.91
FOXD3Q9UJU5 Y_RNA.617-201ENST00000410920 90 ntBASIC3.13□□□□□ -1.91
FOXD3Q9UJU5 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC3.13□□□□□ -1.91
FOXD3Q9UJU5 FTH1P12-201ENST00000432137 551 ntBASIC3.13□□□□□ -1.91
FOXD3Q9UJU5 AF228730.3-201ENST00000436691 102 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 116 ms