Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 RPL30P4-201ENST00000429309 333 ntBASIC3.4□□□□□ -1.87
SOX1O00570 RPS27P22-201ENST00000478056 241 ntBASIC3.4□□□□□ -1.87
SOX1O00570 RNU5E-3P-201ENST00000515913 68 ntBASIC3.4□□□□□ -1.87
SOX1O00570 RNU6-772P-201ENST00000516042 105 ntBASIC3.4□□□□□ -1.87
SOX1O00570 RNU6-589P-201ENST00000516485 107 ntBASIC3.4□□□□□ -1.87
SOX1O00570 RNU6-586P-201ENST00000517265 104 ntBASIC3.4□□□□□ -1.87
SOX1O00570 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.4□□□□□ -1.87
SOX1O00570 AC018630.3-201ENST00000542637 96 ntBASIC3.4□□□□□ -1.87
SOX1O00570 AL929325.1-201ENST00000603096 117 ntBASIC3.4□□□□□ -1.87
SOX1O00570 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
SOX1O00570 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
SOX1O00570 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
SOX1O00570 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.4□□□□□ -1.87
SOX1O00570 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.4□□□□□ -1.87
SOX1O00570 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.4□□□□□ -1.87
SOX1O00570 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.39□□□□□ -1.87
SOX1O00570 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
SOX1O00570 RNA5SP99-201ENST00000364020 114 ntBASIC3.39□□□□□ -1.87
SOX1O00570 Y_RNA.203-201ENST00000364106 102 ntBASIC3.39□□□□□ -1.87
SOX1O00570 Y_RNA.280-201ENST00000364765 112 ntBASIC3.39□□□□□ -1.87
SOX1O00570 SNORA22-201ENST00000383907 134 ntBASIC3.39□□□□□ -1.87
SOX1O00570 RNU2-70P-201ENST00000410718 179 ntBASIC3.39□□□□□ -1.87
SOX1O00570 RPL39P40-201ENST00000445481 146 ntBASIC3.39□□□□□ -1.87
SOX1O00570 AC080013.2-201ENST00000460866 323 ntBASIC3.39□□□□□ -1.87
SOX1O00570 RNU2-34P-201ENST00000516534 121 ntBASIC3.39□□□□□ -1.87
SOX1O00570 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
SOX1O00570 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
SOX1O00570 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
SOX1O00570 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
SOX1O00570 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.39□□□□□ -1.87
SOX1O00570 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
SOX1O00570 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.39□□□□□ -1.87
SOX1O00570 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC3.39□□□□□ -1.87
SOX1O00570 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.39□□□□□ -1.87
SOX1O00570 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC3.38□□□□□ -1.87
SOX1O00570 Y_RNA.114-201ENST00000363265 113 ntBASIC3.38□□□□□ -1.87
SOX1O00570 Y_RNA.164-201ENST00000363709 102 ntBASIC3.38□□□□□ -1.87
SOX1O00570 RNU6-136P-201ENST00000384663 107 ntBASIC3.38□□□□□ -1.87
SOX1O00570 SNORA40.5-201ENST00000391061 128 ntBASIC3.38□□□□□ -1.87
SOX1O00570 RNU6-482P-201ENST00000391068 107 ntBASIC3.38□□□□□ -1.87
SOX1O00570 SNORA26-201ENST00000391286 122 ntBASIC3.38□□□□□ -1.87
SOX1O00570 AL513328.1-201ENST00000446460 224 ntBASIC3.38□□□□□ -1.87
SOX1O00570 AC108210.2-201ENST00000503681 201 ntBASIC3.38□□□□□ -1.87
SOX1O00570 SNORD77.4-201ENST00000516158 81 ntBASIC3.38□□□□□ -1.87
SOX1O00570 RN7SKP209-201ENST00000516888 304 ntBASIC3.38□□□□□ -1.87
SOX1O00570 AC133485.4-201ENST00000561835 220 ntBASIC3.38□□□□□ -1.87
SOX1O00570 RPL23AP91-201ENST00000569211 455 ntBASIC3.38□□□□□ -1.87
SOX1O00570 AC138907.4-201ENST00000570107 226 ntBASIC3.38□□□□□ -1.87
SOX1O00570 AC020914.4-201ENST00000597690 277 ntBASIC3.38□□□□□ -1.87
SOX1O00570 AC110741.2-201ENST00000605278 268 ntBASIC3.38□□□□□ -1.87
SOX1O00570 FAM35DP-201ENST00000323387 2712 ntBASIC3.38□□□□□ -1.87
SOX1O00570 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
SOX1O00570 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
SOX1O00570 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SOX1O00570 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SOX1O00570 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SOX1O00570 RNA5SP322-201ENST00000363617 119 ntBASIC3.37□□□□□ -1.87
SOX1O00570 SNORA14A-201ENST00000364773 135 ntBASIC3.37□□□□□ -1.87
SOX1O00570 Y_RNA.634-201ENST00000364811 113 ntBASIC3.37□□□□□ -1.87
SOX1O00570 AL603914.1-201ENST00000401964 204 ntBASIC3.37□□□□□ -1.87
SOX1O00570 AC126124.2-201ENST00000413542 321 ntBASIC3.37□□□□□ -1.87
SOX1O00570 AL591806.2-201ENST00000433122 173 ntBASIC3.37□□□□□ -1.87
SOX1O00570 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC3.37□□□□□ -1.87
SOX1O00570 SCARNA17.1-201ENST00000516211 143 ntBASIC3.37□□□□□ -1.87
SOX1O00570 SCARNA17.2-201ENST00000516334 143 ntBASIC3.37□□□□□ -1.87
SOX1O00570 RNU6-126P-201ENST00000516685 103 ntBASIC3.37□□□□□ -1.87
SOX1O00570 MIR4679-2-201ENST00000578358 77 ntBASIC3.37□□□□□ -1.87
SOX1O00570 SNORD53-201ENST00000579969 78 ntBASIC3.37□□□□□ -1.87
SOX1O00570 AC097639.2-201ENST00000603159 172 ntBASIC3.37□□□□□ -1.87
SOX1O00570 SCARNA17.4-201ENST00000614296 143 ntBASIC3.37□□□□□ -1.87
SOX1O00570 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
SOX1O00570 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.37□□□□□ -1.87
SOX1O00570 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
SOX1O00570 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.37□□□□□ -1.87
SOX1O00570 AC103988.1-201ENST00000566382 2177 ntBASIC3.36□□□□□ -1.87
SOX1O00570 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.36□□□□□ -1.87
SOX1O00570 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.36□□□□□ -1.87
SOX1O00570 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
SOX1O00570 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
SOX1O00570 Y_RNA.4-201ENST00000362333 112 ntBASIC3.36□□□□□ -1.87
SOX1O00570 MIR196B-201ENST00000384852 84 ntBASIC3.36□□□□□ -1.87
SOX1O00570 AC016909.1-201ENST00000415916 166 ntBASIC3.36□□□□□ -1.87
SOX1O00570 MLLT10P1-201ENST00000418346 262 ntBASIC3.36□□□□□ -1.87
SOX1O00570 AC245102.2-201ENST00000448956 180 ntBASIC3.36□□□□□ -1.87
SOX1O00570 RN7SL93P-201ENST00000463035 293 ntBASIC3.36□□□□□ -1.87
SOX1O00570 MRPS36P2-201ENST00000512569 299 ntBASIC3.36□□□□□ -1.87
SOX1O00570 SCARNA11.3-201ENST00000517276 130 ntBASIC3.36□□□□□ -1.87
SOX1O00570 AC079600.2-201ENST00000550076 130 ntBASIC3.36□□□□□ -1.87
SOX1O00570 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.36□□□□□ -1.87
SOX1O00570 MIR4644-201ENST00000579929 84 ntBASIC3.36□□□□□ -1.87
SOX1O00570 AC108081.1-201ENST00000604358 221 ntBASIC3.36□□□□□ -1.87
SOX1O00570 AC004832.5-201ENST00000608677 401 ntBASIC3.36□□□□□ -1.87
SOX1O00570 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC3.36□□□□□ -1.87
SOX1O00570 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
SOX1O00570 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
SOX1O00570 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
SOX1O00570 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
SOX1O00570 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SOX1O00570 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
SOX1O00570 RNU6-1298P-201ENST00000362456 101 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms