Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC87Q9NVE4 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC87Q9NVE4 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC87Q9NVE4 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC87Q9NVE4 SNORA68.1-201ENST00000364537 132 ntBASIC3.67□□□□□ -1.82
CCDC87Q9NVE4 RNU6-1130P-201ENST00000365434 107 ntBASIC3.67□□□□□ -1.82
CCDC87Q9NVE4 CR769767.1-201ENST00000436337 346 ntBASIC3.67□□□□□ -1.82
CCDC87Q9NVE4 HSPE1P21-201ENST00000438283 308 ntBASIC3.67□□□□□ -1.82
CCDC87Q9NVE4 AL513328.1-201ENST00000446460 224 ntBASIC3.67□□□□□ -1.82
CCDC87Q9NVE4 CYP2C59P-201ENST00000457790 269 ntBASIC3.67□□□□□ -1.82
CCDC87Q9NVE4 RPS29P12-201ENST00000460178 152 ntBASIC3.67□□□□□ -1.82
CCDC87Q9NVE4 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC87Q9NVE4 MIR4724-201ENST00000579485 89 ntBASIC3.67□□□□□ -1.82
CCDC87Q9NVE4 MIR548AI-201ENST00000579940 88 ntBASIC3.67□□□□□ -1.82
CCDC87Q9NVE4 AC105245.1-201ENST00000581934 244 ntBASIC3.67□□□□□ -1.82
CCDC87Q9NVE4 MIR7843-201ENST00000622274 79 ntBASIC3.67□□□□□ -1.82
CCDC87Q9NVE4 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC87Q9NVE4 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC87Q9NVE4 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC87Q9NVE4 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
CCDC87Q9NVE4 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC87Q9NVE4 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC87Q9NVE4 AL021368.2-201ENST00000606125 5352 ntBASIC3.66□□□□□ -1.82
CCDC87Q9NVE4 Y_RNA.24-201ENST00000362508 103 ntBASIC3.66□□□□□ -1.82
CCDC87Q9NVE4 snoU2_19.4-201ENST00000364329 80 ntBASIC3.66□□□□□ -1.82
CCDC87Q9NVE4 Y_RNA.291-201ENST00000364886 113 ntBASIC3.66□□□□□ -1.82
CCDC87Q9NVE4 RNU6-438P-201ENST00000365561 103 ntBASIC3.66□□□□□ -1.82
CCDC87Q9NVE4 RNU6-1235P-201ENST00000384559 107 ntBASIC3.66□□□□□ -1.82
CCDC87Q9NVE4 MIR887-201ENST00000401258 79 ntBASIC3.66□□□□□ -1.82
CCDC87Q9NVE4 AC008134.1-201ENST00000420943 193 ntBASIC3.66□□□□□ -1.82
CCDC87Q9NVE4 SNORD65B-201ENST00000459126 73 ntBASIC3.66□□□□□ -1.82
CCDC87Q9NVE4 RNU6-498P-201ENST00000459468 107 ntBASIC3.66□□□□□ -1.82
CCDC87Q9NVE4 ATP5EP1-201ENST00000510257 156 ntBASIC3.66□□□□□ -1.82
CCDC87Q9NVE4 AC008413.1-201ENST00000511864 177 ntBASIC3.66□□□□□ -1.82
CCDC87Q9NVE4 AC104027.1-201ENST00000521887 300 ntBASIC3.66□□□□□ -1.82
CCDC87Q9NVE4 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC3.66□□□□□ -1.82
CCDC87Q9NVE4 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.66□□□□□ -1.82
CCDC87Q9NVE4 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC87Q9NVE4 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC87Q9NVE4 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.66□□□□□ -1.82
CCDC87Q9NVE4 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
CCDC87Q9NVE4 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
CCDC87Q9NVE4 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.83
CCDC87Q9NVE4 RNU6-1323P-201ENST00000384025 107 ntBASIC3.65□□□□□ -1.83
CCDC87Q9NVE4 Y_RNA.488-201ENST00000384403 102 ntBASIC3.65□□□□□ -1.83
CCDC87Q9NVE4 MIR518C-201ENST00000384822 101 ntBASIC3.65□□□□□ -1.83
CCDC87Q9NVE4 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
CCDC87Q9NVE4 RNU6-1328P-201ENST00000410938 106 ntBASIC3.65□□□□□ -1.83
CCDC87Q9NVE4 RNU6-57P-201ENST00000411348 103 ntBASIC3.65□□□□□ -1.83
CCDC87Q9NVE4 RPL32P35-201ENST00000415214 394 ntBASIC3.65□□□□□ -1.83
CCDC87Q9NVE4 AC009969.1-201ENST00000438726 172 ntBASIC3.65□□□□□ -1.83
CCDC87Q9NVE4 RPS26P55-201ENST00000471178 356 ntBASIC3.65□□□□□ -1.83
CCDC87Q9NVE4 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC87Q9NVE4 RNU7-115P-201ENST00000516433 55 ntBASIC3.65□□□□□ -1.83
CCDC87Q9NVE4 RNU6-1337P-201ENST00000516525 95 ntBASIC3.65□□□□□ -1.83
CCDC87Q9NVE4 RNU7-121P-201ENST00000516604 62 ntBASIC3.65□□□□□ -1.83
CCDC87Q9NVE4 RNU7-116P-201ENST00000516940 62 ntBASIC3.65□□□□□ -1.83
CCDC87Q9NVE4 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC87Q9NVE4 MIR548AY-201ENST00000617669 107 ntBASIC3.65□□□□□ -1.83
CCDC87Q9NVE4 AL355596.1-201ENST00000565399 3996 ntBASIC3.65□□□□□ -1.83
CCDC87Q9NVE4 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.64□□□□□ -1.83
CCDC87Q9NVE4 MIR367-201ENST00000362299 68 ntBASIC3.64□□□□□ -1.83
CCDC87Q9NVE4 RNU6-859P-201ENST00000362728 107 ntBASIC3.64□□□□□ -1.83
CCDC87Q9NVE4 RNU6-969P-201ENST00000383900 105 ntBASIC3.64□□□□□ -1.83
CCDC87Q9NVE4 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
CCDC87Q9NVE4 RNA5SP274-201ENST00000410484 108 ntBASIC3.64□□□□□ -1.83
CCDC87Q9NVE4 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC87Q9NVE4 AC107027.2-201ENST00000512197 115 ntBASIC3.64□□□□□ -1.83
CCDC87Q9NVE4 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC87Q9NVE4 AC109810.1-201ENST00000534066 224 ntBASIC3.64□□□□□ -1.83
CCDC87Q9NVE4 MIR3199-1-201ENST00000582434 88 ntBASIC3.64□□□□□ -1.83
CCDC87Q9NVE4 AP003357.1-201ENST00000604497 148 ntBASIC3.64□□□□□ -1.83
CCDC87Q9NVE4 Y_RNA.778-201ENST00000620203 90 ntBASIC3.64□□□□□ -1.83
CCDC87Q9NVE4 AC068647.2-201ENST00000637380 353 ntBASIC3.64□□□□□ -1.83
CCDC87Q9NVE4 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
CCDC87Q9NVE4 AC068700.1-201ENST00000565862 3754 ntBASIC3.64□□□□□ -1.83
CCDC87Q9NVE4 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC87Q9NVE4 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC87Q9NVE4 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC87Q9NVE4 Y_RNA.124-201ENST00000363339 93 ntBASIC3.63□□□□□ -1.83
CCDC87Q9NVE4 Y_RNA.215-201ENST00000364204 112 ntBASIC3.63□□□□□ -1.83
CCDC87Q9NVE4 RNU4-10P-201ENST00000364383 140 ntBASIC3.63□□□□□ -1.83
CCDC87Q9NVE4 RNU1-112P-201ENST00000364401 164 ntBASIC3.63□□□□□ -1.83
CCDC87Q9NVE4 RNU6-546P-201ENST00000383991 107 ntBASIC3.63□□□□□ -1.83
CCDC87Q9NVE4 SNORD14D-201ENST00000384390 87 ntBASIC3.63□□□□□ -1.83
CCDC87Q9NVE4 MIR218-1-201ENST00000384999 110 ntBASIC3.63□□□□□ -1.83
CCDC87Q9NVE4 RNU6-1228P-201ENST00000391014 107 ntBASIC3.63□□□□□ -1.83
CCDC87Q9NVE4 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.63□□□□□ -1.83
CCDC87Q9NVE4 RPS27P29-201ENST00000463110 252 ntBASIC3.63□□□□□ -1.83
CCDC87Q9NVE4 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC87Q9NVE4 AC022616.8-201ENST00000533569 253 ntBASIC3.63□□□□□ -1.83
CCDC87Q9NVE4 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC3.63□□□□□ -1.83
CCDC87Q9NVE4 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
CCDC87Q9NVE4 AC110774.1-201ENST00000623567 2018 ntBASIC3.63□□□□□ -1.83
CCDC87Q9NVE4 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
CCDC87Q9NVE4 U8.7-201ENST00000364940 136 ntBASIC3.62□□□□□ -1.83
CCDC87Q9NVE4 Y_RNA.497-201ENST00000384447 98 ntBASIC3.62□□□□□ -1.83
CCDC87Q9NVE4 RNU6-1081P-201ENST00000384537 107 ntBASIC3.62□□□□□ -1.83
CCDC87Q9NVE4 MIR95-201ENST00000385072 81 ntBASIC3.62□□□□□ -1.83
CCDC87Q9NVE4 MIR9-1-201ENST00000385198 89 ntBASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms