Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SNORA4.4-201ENST00000515921 135 ntBASIC3.28□□□□□ -1.88
LIG3P49916 SCARNA8-201ENST00000515924 131 ntBASIC3.28□□□□□ -1.88
LIG3P49916 RNU6-453P-201ENST00000516819 85 ntBASIC3.28□□□□□ -1.88
LIG3P49916 MIR3616-201ENST00000584070 92 ntBASIC3.28□□□□□ -1.88
LIG3P49916 AL355297.2-201ENST00000604792 129 ntBASIC3.28□□□□□ -1.88
LIG3P49916 YPEL5P2-201ENST00000605553 359 ntBASIC3.28□□□□□ -1.88
LIG3P49916 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC3.28□□□□□ -1.88
LIG3P49916 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
LIG3P49916 CENPCP1-201ENST00000533085 2578 ntBASIC3.28□□□□□ -1.88
LIG3P49916 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
LIG3P49916 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.27□□□□□ -1.89
LIG3P49916 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.27□□□□□ -1.89
LIG3P49916 RNU4-13P-201ENST00000364019 141 ntBASIC3.27□□□□□ -1.89
LIG3P49916 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
LIG3P49916 CST9LP2-201ENST00000437612 320 ntBASIC3.27□□□□□ -1.89
LIG3P49916 MTCO1P44-201ENST00000441935 243 ntBASIC3.27□□□□□ -1.89
LIG3P49916 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC3.27□□□□□ -1.89
LIG3P49916 RPL23AP54-201ENST00000495129 419 ntBASIC3.27□□□□□ -1.89
LIG3P49916 RNU6-991P-201ENST00000516168 107 ntBASIC3.27□□□□□ -1.89
LIG3P49916 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC3.27□□□□□ -1.89
LIG3P49916 AC004832.5-201ENST00000608677 401 ntBASIC3.27□□□□□ -1.89
LIG3P49916 Y_RNA.778-201ENST00000620203 90 ntBASIC3.27□□□□□ -1.89
LIG3P49916 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
LIG3P49916 AC093010.3-201ENST00000570269 15214 ntBASIC3.27□□□□□ -1.89
LIG3P49916 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
LIG3P49916 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
LIG3P49916 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
LIG3P49916 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
LIG3P49916 Y_RNA.332-201ENST00000365271 113 ntBASIC3.26□□□□□ -1.89
LIG3P49916 Y_RNA.488-201ENST00000384403 102 ntBASIC3.26□□□□□ -1.89
LIG3P49916 MIR181A2-201ENST00000384863 110 ntBASIC3.26□□□□□ -1.89
LIG3P49916 MIR561-201ENST00000385216 97 ntBASIC3.26□□□□□ -1.89
LIG3P49916 RNU6-220P-201ENST00000390919 107 ntBASIC3.26□□□□□ -1.89
LIG3P49916 RNU6-1228P-201ENST00000391014 107 ntBASIC3.26□□□□□ -1.89
LIG3P49916 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.26□□□□□ -1.89
LIG3P49916 RNU6-383P-201ENST00000410864 94 ntBASIC3.26□□□□□ -1.89
LIG3P49916 AL121914.1-201ENST00000450188 156 ntBASIC3.26□□□□□ -1.89
LIG3P49916 EEF1B2P7-201ENST00000451177 676 ntBASIC3.26□□□□□ -1.89
LIG3P49916 AP004217.1-201ENST00000480579 346 ntBASIC3.26□□□□□ -1.89
LIG3P49916 RN7SL504P-201ENST00000494496 287 ntBASIC3.26□□□□□ -1.89
LIG3P49916 RNU6-63P-201ENST00000516690 95 ntBASIC3.26□□□□□ -1.89
LIG3P49916 RN7SKP57-201ENST00000517248 293 ntBASIC3.26□□□□□ -1.89
LIG3P49916 AC090616.3-201ENST00000582184 217 ntBASIC3.26□□□□□ -1.89
LIG3P49916 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.26□□□□□ -1.89
LIG3P49916 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
LIG3P49916 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.26□□□□□ -1.89
LIG3P49916 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.26□□□□□ -1.89
LIG3P49916 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
LIG3P49916 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
LIG3P49916 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.25□□□□□ -1.89
LIG3P49916 RNU6-151P-201ENST00000364158 107 ntBASIC3.25□□□□□ -1.89
LIG3P49916 RNU6-376P-201ENST00000384731 106 ntBASIC3.25□□□□□ -1.89
LIG3P49916 SNORA26.7-201ENST00000391288 122 ntBASIC3.25□□□□□ -1.89
LIG3P49916 MIR548I2-201ENST00000408348 149 ntBASIC3.25□□□□□ -1.89
LIG3P49916 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.25□□□□□ -1.89
LIG3P49916 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.25□□□□□ -1.89
LIG3P49916 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.25□□□□□ -1.89
LIG3P49916 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.25□□□□□ -1.89
LIG3P49916 SNORD116-25-201ENST00000516517 92 ntBASIC3.25□□□□□ -1.89
LIG3P49916 MIR3200-201ENST00000580767 85 ntBASIC3.25□□□□□ -1.89
LIG3P49916 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
LIG3P49916 RNU6-461P-201ENST00000364195 107 ntBASIC3.24□□□□□ -1.89
LIG3P49916 Y_RNA.215-201ENST00000364204 112 ntBASIC3.24□□□□□ -1.89
LIG3P49916 RNU6-728P-201ENST00000365375 104 ntBASIC3.24□□□□□ -1.89
LIG3P49916 RNU6-117P-201ENST00000365415 107 ntBASIC3.24□□□□□ -1.89
LIG3P49916 MT-TT-201ENST00000387460 66 ntBASIC3.24□□□□□ -1.89
LIG3P49916 AL606845.1-201ENST00000404881 255 ntBASIC3.24□□□□□ -1.89
LIG3P49916 RNU4-47P-201ENST00000410876 114 ntBASIC3.24□□□□□ -1.89
LIG3P49916 RPL23AP58-201ENST00000440453 469 ntBASIC3.24□□□□□ -1.89
LIG3P49916 AC025750.2-201ENST00000442609 450 ntBASIC3.24□□□□□ -1.89
LIG3P49916 RNU6-437P-201ENST00000459408 95 ntBASIC3.24□□□□□ -1.89
LIG3P49916 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.24□□□□□ -1.89
LIG3P49916 RNU7-121P-201ENST00000516604 62 ntBASIC3.24□□□□□ -1.89
LIG3P49916 RNU6-856P-201ENST00000516959 98 ntBASIC3.24□□□□□ -1.89
LIG3P49916 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC3.24□□□□□ -1.89
LIG3P49916 MIR4438-201ENST00000585271 93 ntBASIC3.24□□□□□ -1.89
LIG3P49916 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
LIG3P49916 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.24□□□□□ -1.89
LIG3P49916 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
LIG3P49916 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.23□□□□□ -1.89
LIG3P49916 MIR887-201ENST00000401258 79 ntBASIC3.23□□□□□ -1.89
LIG3P49916 MIR1253-201ENST00000408273 105 ntBASIC3.23□□□□□ -1.89
LIG3P49916 RNA5SP511-201ENST00000410487 115 ntBASIC3.23□□□□□ -1.89
LIG3P49916 RNU2-48P-201ENST00000410694 191 ntBASIC3.23□□□□□ -1.89
LIG3P49916 RNA5SP229-201ENST00000410809 99 ntBASIC3.23□□□□□ -1.89
LIG3P49916 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.23□□□□□ -1.89
LIG3P49916 AC003685.2-201ENST00000422795 395 ntBASIC3.23□□□□□ -1.89
LIG3P49916 AL162725.1-201ENST00000435405 301 ntBASIC3.23□□□□□ -1.89
LIG3P49916 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.23□□□□□ -1.89
LIG3P49916 RPL39P40-201ENST00000445481 146 ntBASIC3.23□□□□□ -1.89
LIG3P49916 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.23□□□□□ -1.89
LIG3P49916 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC3.23□□□□□ -1.89
LIG3P49916 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.23□□□□□ -1.89
LIG3P49916 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.23□□□□□ -1.89
LIG3P49916 AC015720.1-201ENST00000565251 277 ntBASIC3.23□□□□□ -1.89
LIG3P49916 MIR5004-201ENST00000579078 107 ntBASIC3.23□□□□□ -1.89
LIG3P49916 AC093732.2-201ENST00000607950 274 ntBASIC3.23□□□□□ -1.89
LIG3P49916 MIR8057-201ENST00000620957 69 ntBASIC3.23□□□□□ -1.89
LIG3P49916 AC091953.5-201ENST00000622919 233 ntBASIC3.23□□□□□ -1.89
LIG3P49916 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 129.7 ms