Protein–RNA interactions for Protein: Q6ZNE9

RUFY4, RUN and FYVE domain-containing protein 4, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUFY4Q6ZNE9 Y_RNA.287-201ENST00000364853 94 ntBASIC3.25□□□□□ -1.89
RUFY4Q6ZNE9 MIR873-201ENST00000401120 77 ntBASIC3.25□□□□□ -1.89
RUFY4Q6ZNE9 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC3.25□□□□□ -1.89
RUFY4Q6ZNE9 AC105272.1-201ENST00000438604 198 ntBASIC3.25□□□□□ -1.89
RUFY4Q6ZNE9 CKS1BP2-201ENST00000497342 240 ntBASIC3.25□□□□□ -1.89
RUFY4Q6ZNE9 ATP5EP1-201ENST00000510257 156 ntBASIC3.25□□□□□ -1.89
RUFY4Q6ZNE9 AC010598.1-201ENST00000510378 103 ntBASIC3.25□□□□□ -1.89
RUFY4Q6ZNE9 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC3.25□□□□□ -1.89
RUFY4Q6ZNE9 MIR4435-1-201ENST00000582552 80 ntBASIC3.25□□□□□ -1.89
RUFY4Q6ZNE9 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.25□□□□□ -1.89
RUFY4Q6ZNE9 AL133393.1-201ENST00000603277 287 ntBASIC3.25□□□□□ -1.89
RUFY4Q6ZNE9 AC006435.5-201ENST00000624486 112 ntBASIC3.25□□□□□ -1.89
RUFY4Q6ZNE9 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
RUFY4Q6ZNE9 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.25□□□□□ -1.89
RUFY4Q6ZNE9 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
RUFY4Q6ZNE9 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
RUFY4Q6ZNE9 Y_RNA.240-201ENST00000364469 95 ntBASIC3.24□□□□□ -1.89
RUFY4Q6ZNE9 RNU6-438P-201ENST00000365561 103 ntBASIC3.24□□□□□ -1.89
RUFY4Q6ZNE9 RNU6-1235P-201ENST00000384559 107 ntBASIC3.24□□□□□ -1.89
RUFY4Q6ZNE9 RNU6-763P-201ENST00000390865 106 ntBASIC3.24□□□□□ -1.89
RUFY4Q6ZNE9 RNA5SP274-201ENST00000410484 108 ntBASIC3.24□□□□□ -1.89
RUFY4Q6ZNE9 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC3.24□□□□□ -1.89
RUFY4Q6ZNE9 HSPE1P13-201ENST00000451143 297 ntBASIC3.24□□□□□ -1.89
RUFY4Q6ZNE9 RNU6-498P-201ENST00000459468 107 ntBASIC3.24□□□□□ -1.89
RUFY4Q6ZNE9 AC090515.1-201ENST00000465295 476 ntBASIC3.24□□□□□ -1.89
RUFY4Q6ZNE9 AP004217.1-201ENST00000480579 346 ntBASIC3.24□□□□□ -1.89
RUFY4Q6ZNE9 Y_RNA.662-201ENST00000516028 97 ntBASIC3.24□□□□□ -1.89
RUFY4Q6ZNE9 RNU6-861P-201ENST00000516745 106 ntBASIC3.24□□□□□ -1.89
RUFY4Q6ZNE9 AC079600.2-201ENST00000550076 130 ntBASIC3.24□□□□□ -1.89
RUFY4Q6ZNE9 MIR4319-201ENST00000577285 85 ntBASIC3.24□□□□□ -1.89
RUFY4Q6ZNE9 AC023043.3-201ENST00000593113 385 ntBASIC3.24□□□□□ -1.89
RUFY4Q6ZNE9 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
RUFY4Q6ZNE9 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
RUFY4Q6ZNE9 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
RUFY4Q6ZNE9 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
RUFY4Q6ZNE9 Y_RNA.308-201ENST00000365043 101 ntBASIC3.23□□□□□ -1.89
RUFY4Q6ZNE9 Y_RNA.341-201ENST00000365341 102 ntBASIC3.23□□□□□ -1.89
RUFY4Q6ZNE9 SNORA72.4-201ENST00000384174 132 ntBASIC3.23□□□□□ -1.89
RUFY4Q6ZNE9 RNU6-851P-201ENST00000384565 107 ntBASIC3.23□□□□□ -1.89
RUFY4Q6ZNE9 AL355497.1-201ENST00000406262 551 ntBASIC3.23□□□□□ -1.89
RUFY4Q6ZNE9 RNA5SP184-201ENST00000411071 108 ntBASIC3.23□□□□□ -1.89
RUFY4Q6ZNE9 RNU2-32P-201ENST00000411193 191 ntBASIC3.23□□□□□ -1.89
RUFY4Q6ZNE9 AC008134.1-201ENST00000420943 193 ntBASIC3.23□□□□□ -1.89
RUFY4Q6ZNE9 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.23□□□□□ -1.89
RUFY4Q6ZNE9 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC3.23□□□□□ -1.89
RUFY4Q6ZNE9 AC087441.2-201ENST00000529141 262 ntBASIC3.23□□□□□ -1.89
RUFY4Q6ZNE9 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.23□□□□□ -1.89
RUFY4Q6ZNE9 AC025754.2-201ENST00000606491 432 ntBASIC3.23□□□□□ -1.89
RUFY4Q6ZNE9 AC013791.1-201ENST00000616619 62 ntBASIC3.23□□□□□ -1.89
RUFY4Q6ZNE9 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.23□□□□□ -1.89
RUFY4Q6ZNE9 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
RUFY4Q6ZNE9 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
RUFY4Q6ZNE9 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
RUFY4Q6ZNE9 AL136360.1-201ENST00000503377 1900 ntBASIC3.23□□□□□ -1.89
RUFY4Q6ZNE9 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC3.22□□□□□ -1.89
RUFY4Q6ZNE9 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.22□□□□□ -1.89
RUFY4Q6ZNE9 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
RUFY4Q6ZNE9 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.22□□□□□ -1.89
RUFY4Q6ZNE9 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
RUFY4Q6ZNE9 Y_RNA.121-201ENST00000363309 113 ntBASIC3.22□□□□□ -1.89
RUFY4Q6ZNE9 RNU6-899P-201ENST00000363947 107 ntBASIC3.22□□□□□ -1.89
RUFY4Q6ZNE9 RNU6-923P-201ENST00000364753 107 ntBASIC3.22□□□□□ -1.89
RUFY4Q6ZNE9 Y_RNA.310-201ENST00000365063 113 ntBASIC3.22□□□□□ -1.89
RUFY4Q6ZNE9 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
RUFY4Q6ZNE9 RNU6-855P-201ENST00000410395 104 ntBASIC3.22□□□□□ -1.89
RUFY4Q6ZNE9 AC010154.1-201ENST00000425857 269 ntBASIC3.22□□□□□ -1.89
RUFY4Q6ZNE9 RPL23AP7-203ENST00000449021 469 ntBASIC3.22□□□□□ -1.89
RUFY4Q6ZNE9 HMGN2P18-201ENST00000450680 270 ntBASIC3.22□□□□□ -1.89
RUFY4Q6ZNE9 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.22□□□□□ -1.89
RUFY4Q6ZNE9 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC3.22□□□□□ -1.89
RUFY4Q6ZNE9 MIR5688-201ENST00000580619 83 ntBASIC3.22□□□□□ -1.89
RUFY4Q6ZNE9 MIR4308-201ENST00000580634 81 ntBASIC3.22□□□□□ -1.89
RUFY4Q6ZNE9 AL449363.1-201ENST00000617815 186 ntBASIC3.22□□□□□ -1.89
RUFY4Q6ZNE9 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.22□□□□□ -1.89
RUFY4Q6ZNE9 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
RUFY4Q6ZNE9 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
RUFY4Q6ZNE9 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
RUFY4Q6ZNE9 AC138915.1-201ENST00000565427 1685 ntBASIC3.21□□□□□ -1.9
RUFY4Q6ZNE9 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
RUFY4Q6ZNE9 MIR561-201ENST00000385216 97 ntBASIC3.21□□□□□ -1.9
RUFY4Q6ZNE9 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
RUFY4Q6ZNE9 AL135790.2-201ENST00000437701 267 ntBASIC3.21□□□□□ -1.9
RUFY4Q6ZNE9 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC3.21□□□□□ -1.9
RUFY4Q6ZNE9 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC3.21□□□□□ -1.9
RUFY4Q6ZNE9 RNA5SP490-201ENST00000517141 136 ntBASIC3.21□□□□□ -1.9
RUFY4Q6ZNE9 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC3.21□□□□□ -1.9
RUFY4Q6ZNE9 AC007536.1-201ENST00000533382 349 ntBASIC3.21□□□□□ -1.9
RUFY4Q6ZNE9 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC3.21□□□□□ -1.9
RUFY4Q6ZNE9 MIR1248-201ENST00000629190 106 ntBASIC3.21□□□□□ -1.9
RUFY4Q6ZNE9 AC096644.4-201ENST00000563417 2912 ntBASIC3.21□□□□□ -1.9
RUFY4Q6ZNE9 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
RUFY4Q6ZNE9 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
RUFY4Q6ZNE9 FAM35CP-201ENST00000554755 2470 ntBASIC3.2□□□□□ -1.9
RUFY4Q6ZNE9 AC062016.1-201ENST00000355719 319 ntBASIC3.2□□□□□ -1.9
RUFY4Q6ZNE9 RNU4-17P-201ENST00000365598 141 ntBASIC3.2□□□□□ -1.9
RUFY4Q6ZNE9 RNU6-746P-201ENST00000384112 109 ntBASIC3.2□□□□□ -1.9
RUFY4Q6ZNE9 SNORA20B-201ENST00000384220 132 ntBASIC3.2□□□□□ -1.9
RUFY4Q6ZNE9 SNORA26.5-201ENST00000391215 123 ntBASIC3.2□□□□□ -1.9
RUFY4Q6ZNE9 SNORD88.1-201ENST00000408684 91 ntBASIC3.2□□□□□ -1.9
RUFY4Q6ZNE9 AC003685.2-201ENST00000422795 395 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 213.5 ms