Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
RNF4P78317 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
RNF4P78317 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.2□□□□□ -1.9
RNF4P78317 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
RNF4P78317 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
RNF4P78317 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.19□□□□□ -1.9
RNF4P78317 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
RNF4P78317 RNU6-1027P-201ENST00000383998 107 ntBASIC3.19□□□□□ -1.9
RNF4P78317 RNU6-1081P-201ENST00000384537 107 ntBASIC3.19□□□□□ -1.9
RNF4P78317 SNORA36B-201ENST00000410438 131 ntBASIC3.19□□□□□ -1.9
RNF4P78317 AC006461.1-201ENST00000412637 326 ntBASIC3.19□□□□□ -1.9
RNF4P78317 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.19□□□□□ -1.9
RNF4P78317 AL357552.1-201ENST00000445254 415 ntBASIC3.19□□□□□ -1.9
RNF4P78317 PRSS3P4-201ENST00000453323 162 ntBASIC3.19□□□□□ -1.9
RNF4P78317 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC3.19□□□□□ -1.9
RNF4P78317 FCF1P8-201ENST00000510322 597 ntBASIC3.19□□□□□ -1.9
RNF4P78317 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC3.19□□□□□ -1.9
RNF4P78317 SNORA25.12-201ENST00000516202 82 ntBASIC3.19□□□□□ -1.9
RNF4P78317 RNU7-115P-201ENST00000516433 55 ntBASIC3.19□□□□□ -1.9
RNF4P78317 IGKV2-26-201ENST00000518305 343 ntBASIC3.19□□□□□ -1.9
RNF4P78317 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.19□□□□□ -1.9
RNF4P78317 MIR4738-201ENST00000579134 87 ntBASIC3.19□□□□□ -1.9
RNF4P78317 AC105245.1-201ENST00000581934 244 ntBASIC3.19□□□□□ -1.9
RNF4P78317 AL391903.3-201ENST00000612158 163 ntBASIC3.19□□□□□ -1.9
RNF4P78317 MIR7975-201ENST00000619350 68 ntBASIC3.19□□□□□ -1.9
RNF4P78317 MIR1248-201ENST00000629190 106 ntBASIC3.19□□□□□ -1.9
RNF4P78317 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.19□□□□□ -1.9
RNF4P78317 AC058791.1-201ENST00000608412 3198 ntBASIC3.19□□□□□ -1.9
RNF4P78317 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
RNF4P78317 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.19□□□□□ -1.9
RNF4P78317 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
RNF4P78317 SNORA63.1-201ENST00000362493 131 ntBASIC3.18□□□□□ -1.9
RNF4P78317 RNU6-271P-201ENST00000363858 105 ntBASIC3.18□□□□□ -1.9
RNF4P78317 RNU6-743P-201ENST00000364151 106 ntBASIC3.18□□□□□ -1.9
RNF4P78317 RNU6-438P-201ENST00000365561 103 ntBASIC3.18□□□□□ -1.9
RNF4P78317 RNU6-1117P-201ENST00000384525 104 ntBASIC3.18□□□□□ -1.9
RNF4P78317 RPL21P10-201ENST00000463521 490 ntBASIC3.18□□□□□ -1.9
RNF4P78317 RPL27AP5-201ENST00000469428 449 ntBASIC3.18□□□□□ -1.9
RNF4P78317 AC010598.1-201ENST00000510378 103 ntBASIC3.18□□□□□ -1.9
RNF4P78317 RNU6-561P-201ENST00000516222 102 ntBASIC3.18□□□□□ -1.9
RNF4P78317 RNU7-121P-201ENST00000516604 62 ntBASIC3.18□□□□□ -1.9
RNF4P78317 SNORA70.19-201ENST00000516717 90 ntBASIC3.18□□□□□ -1.9
RNF4P78317 RN7SKP282-201ENST00000516824 299 ntBASIC3.18□□□□□ -1.9
RNF4P78317 RNA5SP380-201ENST00000517190 98 ntBASIC3.18□□□□□ -1.9
RNF4P78317 MIR3944-201ENST00000581277 108 ntBASIC3.18□□□□□ -1.9
RNF4P78317 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
RNF4P78317 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
RNF4P78317 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.18□□□□□ -1.9
RNF4P78317 AC100821.1-201ENST00000523153 2479 ntBASIC3.18□□□□□ -1.9
RNF4P78317 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
RNF4P78317 SNORD114-7-201ENST00000362520 77 ntBASIC3.17□□□□□ -1.9
RNF4P78317 RNU1-33P-201ENST00000364249 162 ntBASIC3.17□□□□□ -1.9
RNF4P78317 RNA5SP72-201ENST00000364442 117 ntBASIC3.17□□□□□ -1.9
RNF4P78317 MIR15B-201ENST00000385045 98 ntBASIC3.17□□□□□ -1.9
RNF4P78317 AL606845.1-201ENST00000404881 255 ntBASIC3.17□□□□□ -1.9
RNF4P78317 RPS29P31-201ENST00000446147 164 ntBASIC3.17□□□□□ -1.9
RNF4P78317 HSPE1P13-201ENST00000451143 297 ntBASIC3.17□□□□□ -1.9
RNF4P78317 AC006539.3-201ENST00000454258 129 ntBASIC3.17□□□□□ -1.9
RNF4P78317 AC016925.1-201ENST00000458303 298 ntBASIC3.17□□□□□ -1.9
RNF4P78317 AC080013.2-201ENST00000460866 323 ntBASIC3.17□□□□□ -1.9
RNF4P78317 RNA5SP20-201ENST00000515976 84 ntBASIC3.17□□□□□ -1.9
RNF4P78317 SCARNA3-201ENST00000517097 143 ntBASIC3.17□□□□□ -1.9
RNF4P78317 AC018630.3-201ENST00000542637 96 ntBASIC3.17□□□□□ -1.9
RNF4P78317 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.17□□□□□ -1.9
RNF4P78317 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
RNF4P78317 AC074050.1-201ENST00000563247 211 ntBASIC3.17□□□□□ -1.9
RNF4P78317 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC3.17□□□□□ -1.9
RNF4P78317 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
RNF4P78317 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.17□□□□□ -1.9
RNF4P78317 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.17□□□□□ -1.9
RNF4P78317 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.17□□□□□ -1.9
RNF4P78317 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.16□□□□□ -1.9
RNF4P78317 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
RNF4P78317 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
RNF4P78317 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.16□□□□□ -1.9
RNF4P78317 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.16□□□□□ -1.9
RNF4P78317 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.16□□□□□ -1.9
RNF4P78317 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
RNF4P78317 RNU6-144P-201ENST00000383951 107 ntBASIC3.16□□□□□ -1.9
RNF4P78317 RNU6-959P-201ENST00000384671 107 ntBASIC3.16□□□□□ -1.9
RNF4P78317 RNU6-417P-201ENST00000384712 107 ntBASIC3.16□□□□□ -1.9
RNF4P78317 Y_RNA.586-201ENST00000391146 98 ntBASIC3.16□□□□□ -1.9
RNF4P78317 RNU6-257P-201ENST00000410238 98 ntBASIC3.16□□□□□ -1.9
RNF4P78317 RNU2-32P-201ENST00000411193 191 ntBASIC3.16□□□□□ -1.9
RNF4P78317 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC3.16□□□□□ -1.9
RNF4P78317 RNA5SP490-201ENST00000517141 136 ntBASIC3.16□□□□□ -1.9
RNF4P78317 AC025647.1-201ENST00000517879 253 ntBASIC3.16□□□□□ -1.9
RNF4P78317 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.16□□□□□ -1.9
RNF4P78317 MIR548X2-201ENST00000579776 100 ntBASIC3.16□□□□□ -1.9
RNF4P78317 MIR4425-201ENST00000580572 84 ntBASIC3.16□□□□□ -1.9
RNF4P78317 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.16□□□□□ -1.9
RNF4P78317 DNAJC19P2-201ENST00000593340 302 ntBASIC3.16□□□□□ -1.9
RNF4P78317 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC3.16□□□□□ -1.9
RNF4P78317 AC107294.3-201ENST00000609211 526 ntBASIC3.16□□□□□ -1.9
RNF4P78317 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
RNF4P78317 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
RNF4P78317 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
RNF4P78317 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
RNF4P78317 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.15□□□□□ -1.9
RNF4P78317 AL356274.2-201ENST00000624379 3752 ntBASIC3.15□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 126.3 ms