Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 AL162741.1-201ENST00000565563 1558 ntBASIC18.85■□□□□ 0.61
USH1CQ9Y6N9 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USH1CQ9Y6N9 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USH1CQ9Y6N9 SDHAP1-207ENST00000440850 2000 ntBASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 CYP2T1P-201ENST00000432607 1285 ntBASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 DUX4L16-201ENST00000555130 1264 ntBASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 HTR7P1-202ENST00000624664 4411 ntBASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.84■□□□□ 0.61
USH1CQ9Y6N9 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USH1CQ9Y6N9 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
USH1CQ9Y6N9 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
USH1CQ9Y6N9 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
USH1CQ9Y6N9 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USH1CQ9Y6N9 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.83■□□□□ 0.61
USH1CQ9Y6N9 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.83■□□□□ 0.61
USH1CQ9Y6N9 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USH1CQ9Y6N9 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.83■□□□□ 0.61
USH1CQ9Y6N9 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USH1CQ9Y6N9 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.83■□□□□ 0.61
USH1CQ9Y6N9 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USH1CQ9Y6N9 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
USH1CQ9Y6N9 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USH1CQ9Y6N9 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.83■□□□□ 0.6
USH1CQ9Y6N9 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC18.83■□□□□ 0.6
USH1CQ9Y6N9 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.83■□□□□ 0.6
USH1CQ9Y6N9 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
USH1CQ9Y6N9 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USH1CQ9Y6N9 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
USH1CQ9Y6N9 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
USH1CQ9Y6N9 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
USH1CQ9Y6N9 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USH1CQ9Y6N9 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USH1CQ9Y6N9 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
USH1CQ9Y6N9 ESPNP-201ENST00000270691 2015 ntBASIC18.83■□□□□ 0.6
USH1CQ9Y6N9 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 AC073592.3-201ENST00000625118 1834 ntBASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 AC104417.2-201ENST00000562989 1793 ntBASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USH1CQ9Y6N9 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms