Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 AL161938.1-201ENST00000569833 2180 ntBASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A3BPQ9Y5P4 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 UBQLN4P1-201ENST00000461599 1801 ntBASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 GOLGA6L5P-202ENST00000515341 1828 ntBASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 GAS2L1P1-201ENST00000420145 1480 ntBASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 SLC25A1P2-201ENST00000430693 912 ntBASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 TK2-213ENST00000563369 882 ntTSL 5 BASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A3BPQ9Y5P4 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 TERF1P1-201ENST00000311003 1181 ntBASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 TMPOP1-202ENST00000424642 1267 ntBASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 CCR12P-201ENST00000446203 998 ntBASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 PRSS44-201ENST00000515154 1146 ntBASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 FAM87A-204ENST00000613235 858 ntBASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 AC116562.4-202ENST00000641738 218 ntBASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 AC092865.7-201ENST00000641832 219 ntBASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 AL020996.1-203ENST00000536896 2307 ntBASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A3BPQ9Y5P4 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC21.14■□□□□ 0.98
COL4A3BPQ9Y5P4 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL4A3BPQ9Y5P4 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC21.14■□□□□ 0.98
COL4A3BPQ9Y5P4 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL4A3BPQ9Y5P4 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
COL4A3BPQ9Y5P4 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
COL4A3BPQ9Y5P4 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A3BPQ9Y5P4 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC21.14■□□□□ 0.97
COL4A3BPQ9Y5P4 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A3BPQ9Y5P4 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC21.14■□□□□ 0.97
COL4A3BPQ9Y5P4 AL137013.1-201ENST00000432946 1228 ntBASIC21.14■□□□□ 0.97
COL4A3BPQ9Y5P4 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A3BPQ9Y5P4 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC21.14■□□□□ 0.97
COL4A3BPQ9Y5P4 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC21.14■□□□□ 0.97
COL4A3BPQ9Y5P4 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC21.14■□□□□ 0.97
COL4A3BPQ9Y5P4 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A3BPQ9Y5P4 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
COL4A3BPQ9Y5P4 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC21.14■□□□□ 0.97
COL4A3BPQ9Y5P4 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A3BPQ9Y5P4 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A3BPQ9Y5P4 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A3BPQ9Y5P4 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC21.14■□□□□ 0.97
COL4A3BPQ9Y5P4 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A3BPQ9Y5P4 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC21.14■□□□□ 0.97
COL4A3BPQ9Y5P4 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A3BPQ9Y5P4 AC004408.2-201ENST00000623613 2777 ntBASIC21.14■□□□□ 0.97
COL4A3BPQ9Y5P4 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A3BPQ9Y5P4 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms