Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
NOD1Q9Y239 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NOD1Q9Y239 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC20.84■□□□□ 0.93
NOD1Q9Y239 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NOD1Q9Y239 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NOD1Q9Y239 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NOD1Q9Y239 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.84■□□□□ 0.93
NOD1Q9Y239 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.84■□□□□ 0.93
NOD1Q9Y239 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NOD1Q9Y239 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NOD1Q9Y239 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC20.84■□□□□ 0.93
NOD1Q9Y239 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NOD1Q9Y239 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NOD1Q9Y239 AC111152.3-201ENST00000569699 673 ntBASIC20.84■□□□□ 0.93
NOD1Q9Y239 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NOD1Q9Y239 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NOD1Q9Y239 AC112497.1-201ENST00000624824 639 ntBASIC20.84■□□□□ 0.93
NOD1Q9Y239 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
NOD1Q9Y239 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NOD1Q9Y239 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NOD1Q9Y239 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NOD1Q9Y239 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
NOD1Q9Y239 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NOD1Q9Y239 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
NOD1Q9Y239 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NOD1Q9Y239 AC016734.2-201ENST00000624325 1377 ntBASIC20.84■□□□□ 0.93
NOD1Q9Y239 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
NOD1Q9Y239 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NOD1Q9Y239 GAS2L1P1-201ENST00000420145 1480 ntBASIC20.83■□□□□ 0.93
NOD1Q9Y239 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
NOD1Q9Y239 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.83■□□□□ 0.93
NOD1Q9Y239 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
NOD1Q9Y239 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NOD1Q9Y239 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
NOD1Q9Y239 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
NOD1Q9Y239 RN7SL510P-201ENST00000581311 263 ntBASIC20.83■□□□□ 0.93
NOD1Q9Y239 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC20.83■□□□□ 0.93
NOD1Q9Y239 KLK8-205ENST00000593490 267 ntTSL 3 BASIC20.83■□□□□ 0.93
NOD1Q9Y239 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.83■□□□□ 0.93
NOD1Q9Y239 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC20.83■□□□□ 0.93
NOD1Q9Y239 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.93
NOD1Q9Y239 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
NOD1Q9Y239 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
NOD1Q9Y239 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NOD1Q9Y239 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NOD1Q9Y239 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
NOD1Q9Y239 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC20.83■□□□□ 0.92
NOD1Q9Y239 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NOD1Q9Y239 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
NOD1Q9Y239 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
NOD1Q9Y239 TCF3P1-201ENST00000423021 1937 ntBASIC20.82■□□□□ 0.92
NOD1Q9Y239 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.82■□□□□ 0.92
NOD1Q9Y239 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NOD1Q9Y239 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NOD1Q9Y239 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NOD1Q9Y239 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NOD1Q9Y239 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
NOD1Q9Y239 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NOD1Q9Y239 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NOD1Q9Y239 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NOD1Q9Y239 PPIH-202ENST00000372549 327 ntTSL 3 BASIC20.82■□□□□ 0.92
NOD1Q9Y239 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC20.82■□□□□ 0.92
NOD1Q9Y239 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC20.82■□□□□ 0.92
NOD1Q9Y239 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC20.82■□□□□ 0.92
NOD1Q9Y239 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC20.82■□□□□ 0.92
NOD1Q9Y239 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC20.82■□□□□ 0.92
NOD1Q9Y239 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
NOD1Q9Y239 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
NOD1Q9Y239 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC20.82■□□□□ 0.92
NOD1Q9Y239 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC20.82■□□□□ 0.92
NOD1Q9Y239 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC20.82■□□□□ 0.92
NOD1Q9Y239 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
NOD1Q9Y239 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.82■□□□□ 0.92
NOD1Q9Y239 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC20.82■□□□□ 0.92
NOD1Q9Y239 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.82■□□□□ 0.92
NOD1Q9Y239 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NOD1Q9Y239 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
NOD1Q9Y239 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NOD1Q9Y239 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC20.81■□□□□ 0.92
NOD1Q9Y239 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NOD1Q9Y239 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NOD1Q9Y239 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.81■□□□□ 0.92
NOD1Q9Y239 AL162741.1-201ENST00000565563 1558 ntBASIC20.81■□□□□ 0.92
NOD1Q9Y239 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.81■□□□□ 0.92
NOD1Q9Y239 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.81■□□□□ 0.92
NOD1Q9Y239 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NOD1Q9Y239 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.81■□□□□ 0.92
NOD1Q9Y239 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NOD1Q9Y239 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
NOD1Q9Y239 AC004870.1-201ENST00000315132 882 ntBASIC20.81■□□□□ 0.92
NOD1Q9Y239 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
NOD1Q9Y239 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.81■□□□□ 0.92
NOD1Q9Y239 SEC1P-202ENST00000473944 940 ntBASIC20.81■□□□□ 0.92
NOD1Q9Y239 NAA38-203ENST00000575071 553 ntTSL 2 BASIC20.81■□□□□ 0.92
NOD1Q9Y239 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.81■□□□□ 0.92
NOD1Q9Y239 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC20.81■□□□□ 0.92
NOD1Q9Y239 AL157888.1-201ENST00000631930 593 ntBASIC20.81■□□□□ 0.92
NOD1Q9Y239 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NOD1Q9Y239 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NOD1Q9Y239 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms