Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 AC092647.4-201ENST00000457211 535 ntBASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 AL441883.1-201ENST00000566170 1045 ntBASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 AC091076.1-201ENST00000610741 619 ntBASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 MED25-212ENST00000618715 1467 ntTSL 5 BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.72■□□□□ 0.91
TRAIPQ9BWF2 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 AC018445.3-201ENST00000624177 1945 ntBASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 AC140113.3-201ENST00000605663 199 ntBASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 BX323043.1-201ENST00000641006 1765 ntBASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 SDHAP1-207ENST00000440850 2000 ntBASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 TBC1D3P2-202ENST00000577902 1649 ntBASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRAIPQ9BWF2 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.7■□□□□ 0.91
TRAIPQ9BWF2 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRAIPQ9BWF2 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.7■□□□□ 0.9
TRAIPQ9BWF2 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.9
TRAIPQ9BWF2 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
TRAIPQ9BWF2 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.7■□□□□ 0.9
TRAIPQ9BWF2 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC20.7■□□□□ 0.9
TRAIPQ9BWF2 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRAIPQ9BWF2 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRAIPQ9BWF2 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.7■□□□□ 0.9
TRAIPQ9BWF2 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRAIPQ9BWF2 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.7■□□□□ 0.9
TRAIPQ9BWF2 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC20.7■□□□□ 0.9
TRAIPQ9BWF2 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
TRAIPQ9BWF2 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRAIPQ9BWF2 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRAIPQ9BWF2 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC20.7■□□□□ 0.9
TRAIPQ9BWF2 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
TRAIPQ9BWF2 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
TRAIPQ9BWF2 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRAIPQ9BWF2 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRAIPQ9BWF2 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.69■□□□□ 0.9
TRAIPQ9BWF2 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRAIPQ9BWF2 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20.69■□□□□ 0.9
TRAIPQ9BWF2 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC20.69■□□□□ 0.9
TRAIPQ9BWF2 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRAIPQ9BWF2 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC20.69■□□□□ 0.9
TRAIPQ9BWF2 MIR4674-201ENST00000582457 87 ntBASIC20.69■□□□□ 0.9
TRAIPQ9BWF2 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC20.69■□□□□ 0.9
TRAIPQ9BWF2 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRAIPQ9BWF2 AL023973.1-201ENST00000624619 620 ntBASIC20.69■□□□□ 0.9
TRAIPQ9BWF2 AL121956.5-201ENST00000625261 221 ntBASIC20.69■□□□□ 0.9
TRAIPQ9BWF2 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRAIPQ9BWF2 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.69■□□□□ 0.9
TRAIPQ9BWF2 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.69■□□□□ 0.9
TRAIPQ9BWF2 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
TRAIPQ9BWF2 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRAIPQ9BWF2 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
TRAIPQ9BWF2 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.69■□□□□ 0.9
TRAIPQ9BWF2 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms