Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC14.19□□□□□ -0.14
LINC00477Q96M19 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 NEFHP1-201ENST00000412845 2629 ntBASIC14.19□□□□□ -0.14
LINC00477Q96M19 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC14.19□□□□□ -0.14
LINC00477Q96M19 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC14.19□□□□□ -0.14
LINC00477Q96M19 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC14.19□□□□□ -0.14
LINC00477Q96M19 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC14.19□□□□□ -0.14
LINC00477Q96M19 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC14.19□□□□□ -0.14
LINC00477Q96M19 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC14.19□□□□□ -0.14
LINC00477Q96M19 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC14.19□□□□□ -0.14
LINC00477Q96M19 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 AC098934.4-201ENST00000564127 592 ntBASIC14.19□□□□□ -0.14
LINC00477Q96M19 AC142086.2-201ENST00000569753 217 ntBASIC14.19□□□□□ -0.14
LINC00477Q96M19 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
LINC00477Q96M19 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC14.19□□□□□ -0.14
LINC00477Q96M19 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
LINC00477Q96M19 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC14.18□□□□□ -0.14
LINC00477Q96M19 GAS2L1P1-201ENST00000420145 1480 ntBASIC14.18□□□□□ -0.14
LINC00477Q96M19 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC14.18□□□□□ -0.14
LINC00477Q96M19 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC14.18□□□□□ -0.14
LINC00477Q96M19 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC14.18□□□□□ -0.14
LINC00477Q96M19 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC14.18□□□□□ -0.14
LINC00477Q96M19 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
LINC00477Q96M19 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC14.18□□□□□ -0.14
LINC00477Q96M19 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC14.18□□□□□ -0.14
LINC00477Q96M19 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC14.18□□□□□ -0.14
LINC00477Q96M19 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC14.18□□□□□ -0.14
LINC00477Q96M19 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
LINC00477Q96M19 UNC93B5-201ENST00000530315 699 ntBASIC14.18□□□□□ -0.14
LINC00477Q96M19 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC14.18□□□□□ -0.14
LINC00477Q96M19 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC14.18□□□□□ -0.14
LINC00477Q96M19 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC14.18□□□□□ -0.14
LINC00477Q96M19 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
LINC00477Q96M19 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC14.18□□□□□ -0.14
LINC00477Q96M19 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
LINC00477Q96M19 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00477Q96M19 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00477Q96M19 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00477Q96M19 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00477Q96M19 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00477Q96M19 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
LINC00477Q96M19 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC14.17□□□□□ -0.14
LINC00477Q96M19 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00477Q96M19 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00477Q96M19 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00477Q96M19 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00477Q96M19 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
LINC00477Q96M19 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
LINC00477Q96M19 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms