Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 VPS51-217ENST00000639871 243 ntTSL 5 BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 AC093525.10-201ENST00000625130 1569 ntBASIC15.6■□□□□ 0.09
CSPG4Q6UVK1 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 AL162377.1-201ENST00000618844 1793 ntBASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 KRT18P58-201ENST00000527480 1120 ntBASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 LINC01711-201ENST00000598340 967 ntBASIC15.59■□□□□ 0.09
CSPG4Q6UVK1 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CSPG4Q6UVK1 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CSPG4Q6UVK1 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
CSPG4Q6UVK1 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC15.58■□□□□ 0.08
CSPG4Q6UVK1 BET1L-206ENST00000486280 665 ntTSL 3 BASIC15.58■□□□□ 0.08
CSPG4Q6UVK1 SLC25A1P1-201ENST00000528351 927 ntBASIC15.58■□□□□ 0.08
CSPG4Q6UVK1 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC15.58■□□□□ 0.08
CSPG4Q6UVK1 KRT8P26-201ENST00000534154 1276 ntBASIC15.58■□□□□ 0.08
CSPG4Q6UVK1 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
CSPG4Q6UVK1 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
CSPG4Q6UVK1 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CSPG4Q6UVK1 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC15.58■□□□□ 0.08
CSPG4Q6UVK1 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
CSPG4Q6UVK1 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CSPG4Q6UVK1 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CSPG4Q6UVK1 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CSPG4Q6UVK1 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC15.58■□□□□ 0.08
CSPG4Q6UVK1 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CSPG4Q6UVK1 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
CSPG4Q6UVK1 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 MIR574-201ENST00000385209 96 ntBASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 AL590627.1-203ENST00000421194 1026 ntBASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 HTR7P1-202ENST00000624664 4411 ntBASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 BMF-207ENST00000559701 630 ntTSL 3 BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 AC024243.1-201ENST00000609234 778 ntBASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 SPEG-225ENST00000617028 815 ntTSL 5 BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 AC104417.2-201ENST00000562989 1793 ntBASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms