Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CHD9Q3L8U1 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CHD9Q3L8U1 AC092667.1-201ENST00000434301 2586 ntBASIC20.07■□□□□ 0.8
CHD9Q3L8U1 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
CHD9Q3L8U1 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHD9Q3L8U1 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHD9Q3L8U1 MIR564-202ENST00000385049 94 ntBASIC20.07■□□□□ 0.8
CHD9Q3L8U1 AL031284.1-201ENST00000419297 478 ntBASIC20.07■□□□□ 0.8
CHD9Q3L8U1 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC20.07■□□□□ 0.8
CHD9Q3L8U1 KRT18P23-201ENST00000435622 1283 ntBASIC20.07■□□□□ 0.8
CHD9Q3L8U1 RPL13AP23-201ENST00000480739 586 ntBASIC20.07■□□□□ 0.8
CHD9Q3L8U1 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC20.07■□□□□ 0.8
CHD9Q3L8U1 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC20.07■□□□□ 0.8
CHD9Q3L8U1 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC20.07■□□□□ 0.8
CHD9Q3L8U1 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHD9Q3L8U1 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.07■□□□□ 0.8
CHD9Q3L8U1 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CHD9Q3L8U1 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC20.07■□□□□ 0.8
CHD9Q3L8U1 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHD9Q3L8U1 SDHAP1-207ENST00000440850 2000 ntBASIC20.07■□□□□ 0.8
CHD9Q3L8U1 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.07■□□□□ 0.8
CHD9Q3L8U1 AP001160.2-201ENST00000596071 487 ntBASIC20.07■□□□□ 0.8
CHD9Q3L8U1 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC20.07■□□□□ 0.8
CHD9Q3L8U1 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHD9Q3L8U1 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CHD9Q3L8U1 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHD9Q3L8U1 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC20.06■□□□□ 0.8
CHD9Q3L8U1 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CHD9Q3L8U1 PMS2P2-201ENST00000425039 1128 ntBASIC20.06■□□□□ 0.8
CHD9Q3L8U1 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHD9Q3L8U1 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.06■□□□□ 0.8
CHD9Q3L8U1 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.06■□□□□ 0.8
CHD9Q3L8U1 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHD9Q3L8U1 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHD9Q3L8U1 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC20.06■□□□□ 0.8
CHD9Q3L8U1 IGHV3-22-201ENST00000520721 359 ntBASIC20.06■□□□□ 0.8
CHD9Q3L8U1 AC009237.14-201ENST00000609975 1594 ntBASIC20.06■□□□□ 0.8
CHD9Q3L8U1 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CHD9Q3L8U1 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC20.06■□□□□ 0.8
CHD9Q3L8U1 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 AL592071.1-201ENST00000611956 408 ntBASIC20.05■□□□□ 0.8
CHD9Q3L8U1 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHD9Q3L8U1 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHD9Q3L8U1 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHD9Q3L8U1 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHD9Q3L8U1 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC20.04■□□□□ 0.8
CHD9Q3L8U1 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CHD9Q3L8U1 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHD9Q3L8U1 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
CHD9Q3L8U1 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHD9Q3L8U1 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHD9Q3L8U1 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHD9Q3L8U1 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHD9Q3L8U1 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHD9Q3L8U1 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHD9Q3L8U1 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHD9Q3L8U1 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC20.04■□□□□ 0.8
CHD9Q3L8U1 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC20.04■□□□□ 0.8
CHD9Q3L8U1 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CHD9Q3L8U1 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC20.04■□□□□ 0.8
CHD9Q3L8U1 AL691403.2-201ENST00000618460 490 ntBASIC20.04■□□□□ 0.8
CHD9Q3L8U1 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHD9Q3L8U1 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CHD9Q3L8U1 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CHD9Q3L8U1 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CHD9Q3L8U1 LBH-204ENST00000406087 559 ntTSL 4 BASIC20.03■□□□□ 0.8
CHD9Q3L8U1 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CHD9Q3L8U1 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC20.03■□□□□ 0.8
CHD9Q3L8U1 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.03■□□□□ 0.8
CHD9Q3L8U1 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.03■□□□□ 0.8
CHD9Q3L8U1 LINC01711-201ENST00000598340 967 ntBASIC20.03■□□□□ 0.8
CHD9Q3L8U1 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.03■□□□□ 0.8
CHD9Q3L8U1 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CHD9Q3L8U1 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CHD9Q3L8U1 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CHD9Q3L8U1 EMD-201ENST00000369835 966 ntTSL 3 BASIC20.03■□□□□ 0.8
CHD9Q3L8U1 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms