Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SRP54P61011 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SRP54P61011 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
SRP54P61011 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SRP54P61011 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SRP54P61011 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SRP54P61011 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC18.66■□□□□ 0.58
SRP54P61011 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SRP54P61011 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SRP54P61011 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.66■□□□□ 0.58
SRP54P61011 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.66■□□□□ 0.58
SRP54P61011 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.66■□□□□ 0.58
SRP54P61011 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SRP54P61011 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SRP54P61011 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SRP54P61011 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.66■□□□□ 0.58
SRP54P61011 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SRP54P61011 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18.66■□□□□ 0.58
SRP54P61011 MIR4674-201ENST00000582457 87 ntBASIC18.66■□□□□ 0.58
SRP54P61011 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
SRP54P61011 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SRP54P61011 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.66■□□□□ 0.58
SRP54P61011 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SRP54P61011 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
SRP54P61011 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SRP54P61011 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SRP54P61011 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SRP54P61011 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
SRP54P61011 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SRP54P61011 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
SRP54P61011 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SRP54P61011 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.66■□□□□ 0.58
SRP54P61011 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SRP54P61011 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
SRP54P61011 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SRP54P61011 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SRP54P61011 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
SRP54P61011 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.65■□□□□ 0.58
SRP54P61011 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.65■□□□□ 0.58
SRP54P61011 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.65■□□□□ 0.58
SRP54P61011 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.65■□□□□ 0.58
SRP54P61011 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
SRP54P61011 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SRP54P61011 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.65■□□□□ 0.58
SRP54P61011 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.65■□□□□ 0.58
SRP54P61011 AC009947.2-201ENST00000444014 672 ntBASIC18.65■□□□□ 0.58
SRP54P61011 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC18.65■□□□□ 0.58
SRP54P61011 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC18.65■□□□□ 0.58
SRP54P61011 AL441883.1-201ENST00000566170 1045 ntBASIC18.65■□□□□ 0.58
SRP54P61011 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.65■□□□□ 0.58
SRP54P61011 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SRP54P61011 AC008622.2-201ENST00000617006 1229 ntBASIC18.65■□□□□ 0.58
SRP54P61011 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SRP54P61011 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SRP54P61011 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SRP54P61011 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
SRP54P61011 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SRP54P61011 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.65■□□□□ 0.58
SRP54P61011 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.65■□□□□ 0.58
SRP54P61011 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SRP54P61011 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SRP54P61011 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SRP54P61011 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.65■□□□□ 0.58
SRP54P61011 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.65■□□□□ 0.58
SRP54P61011 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SRP54P61011 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SRP54P61011 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SRP54P61011 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.64■□□□□ 0.57
SRP54P61011 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.64■□□□□ 0.57
SRP54P61011 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
SRP54P61011 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SRP54P61011 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SRP54P61011 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.64■□□□□ 0.57
SRP54P61011 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.64■□□□□ 0.57
SRP54P61011 AP000523.1-201ENST00000398242 1049 ntBASIC18.64■□□□□ 0.57
SRP54P61011 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
SRP54P61011 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.64■□□□□ 0.57
SRP54P61011 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SRP54P61011 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.64■□□□□ 0.57
SRP54P61011 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.64■□□□□ 0.57
SRP54P61011 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SRP54P61011 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SRP54P61011 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.64■□□□□ 0.57
SRP54P61011 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SRP54P61011 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.64■□□□□ 0.57
SRP54P61011 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.64■□□□□ 0.57
SRP54P61011 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.63■□□□□ 0.57
SRP54P61011 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SRP54P61011 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SRP54P61011 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SRP54P61011 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SRP54P61011 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SRP54P61011 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SRP54P61011 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SRP54P61011 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SRP54P61011 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.63■□□□□ 0.57
SRP54P61011 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.63■□□□□ 0.57
SRP54P61011 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.63■□□□□ 0.57
SRP54P61011 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SRP54P61011 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms