Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC20.85■□□□□ 0.93
PEX3P56589 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PEX3P56589 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC20.85■□□□□ 0.93
PEX3P56589 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.85■□□□□ 0.93
PEX3P56589 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.85■□□□□ 0.93
PEX3P56589 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PEX3P56589 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.85■□□□□ 0.93
PEX3P56589 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
PEX3P56589 AC005363.2-201ENST00000618631 242 ntBASIC20.85■□□□□ 0.93
PEX3P56589 AC010653.2-201ENST00000623505 997 ntBASIC20.85■□□□□ 0.93
PEX3P56589 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PEX3P56589 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PEX3P56589 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PEX3P56589 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.85■□□□□ 0.93
PEX3P56589 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PEX3P56589 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC20.85■□□□□ 0.93
PEX3P56589 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PEX3P56589 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.85■□□□□ 0.93
PEX3P56589 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PEX3P56589 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PEX3P56589 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PEX3P56589 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.85■□□□□ 0.93
PEX3P56589 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.84■□□□□ 0.93
PEX3P56589 AC120498.9-201ENST00000339021 3867 ntBASIC20.84■□□□□ 0.93
PEX3P56589 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PEX3P56589 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PEX3P56589 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
PEX3P56589 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PEX3P56589 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PEX3P56589 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
PEX3P56589 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PEX3P56589 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PEX3P56589 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PEX3P56589 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PEX3P56589 SLC25A3P1-201ENST00000443844 931 ntBASIC20.84■□□□□ 0.93
PEX3P56589 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.84■□□□□ 0.93
PEX3P56589 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.84■□□□□ 0.93
PEX3P56589 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
PEX3P56589 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.84■□□□□ 0.93
PEX3P56589 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
PEX3P56589 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PEX3P56589 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.84■□□□□ 0.93
PEX3P56589 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.84■□□□□ 0.93
PEX3P56589 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC20.84■□□□□ 0.93
PEX3P56589 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.84■□□□□ 0.93
PEX3P56589 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
PEX3P56589 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PEX3P56589 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PEX3P56589 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.84■□□□□ 0.93
PEX3P56589 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.84■□□□□ 0.93
PEX3P56589 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PEX3P56589 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PEX3P56589 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
PEX3P56589 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
PEX3P56589 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PEX3P56589 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PEX3P56589 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PEX3P56589 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.83■□□□□ 0.93
PEX3P56589 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.83■□□□□ 0.93
PEX3P56589 MIR4674-201ENST00000582457 87 ntBASIC20.83■□□□□ 0.93
PEX3P56589 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.83■□□□□ 0.93
PEX3P56589 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
PEX3P56589 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
PEX3P56589 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PEX3P56589 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.83■□□□□ 0.93
PEX3P56589 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
PEX3P56589 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
PEX3P56589 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.92
PEX3P56589 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PEX3P56589 GPAT2P1-201ENST00000444924 1672 ntBASIC20.83■□□□□ 0.92
PEX3P56589 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PEX3P56589 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
PEX3P56589 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC20.82■□□□□ 0.92
PEX3P56589 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.82■□□□□ 0.92
PEX3P56589 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
PEX3P56589 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.82■□□□□ 0.92
PEX3P56589 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PEX3P56589 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
PEX3P56589 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
PEX3P56589 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
PEX3P56589 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PEX3P56589 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC20.82■□□□□ 0.92
PEX3P56589 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
PEX3P56589 AL512353.2-201ENST00000448759 1962 ntBASIC20.82■□□□□ 0.92
PEX3P56589 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.82■□□□□ 0.92
PEX3P56589 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
PEX3P56589 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PEX3P56589 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PEX3P56589 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PEX3P56589 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
PEX3P56589 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PEX3P56589 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PEX3P56589 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PEX3P56589 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PEX3P56589 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.81■□□□□ 0.92
PEX3P56589 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
PEX3P56589 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.81■□□□□ 0.92
PEX3P56589 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
PEX3P56589 HMGA1P5-201ENST00000412453 271 ntBASIC20.81■□□□□ 0.92
PEX3P56589 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms