Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
LIG3P49916 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.85■□□□□ 0.77
LIG3P49916 AC110285.5-201ENST00000611501 352 ntBASIC19.85■□□□□ 0.77
LIG3P49916 Six3os1_6.1-201ENST00000620790 196 ntBASIC19.85■□□□□ 0.77
LIG3P49916 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC19.85■□□□□ 0.77
LIG3P49916 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LIG3P49916 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC19.85■□□□□ 0.77
LIG3P49916 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.85■□□□□ 0.77
LIG3P49916 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.85■□□□□ 0.77
LIG3P49916 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIG3P49916 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.85■□□□□ 0.77
LIG3P49916 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.85■□□□□ 0.77
LIG3P49916 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
LIG3P49916 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
LIG3P49916 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIG3P49916 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIG3P49916 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC19.85■□□□□ 0.77
LIG3P49916 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.84■□□□□ 0.77
LIG3P49916 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIG3P49916 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC19.84■□□□□ 0.77
LIG3P49916 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.84■□□□□ 0.77
LIG3P49916 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
LIG3P49916 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIG3P49916 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.84■□□□□ 0.77
LIG3P49916 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIG3P49916 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIG3P49916 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIG3P49916 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.84■□□□□ 0.77
LIG3P49916 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIG3P49916 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIG3P49916 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.84■□□□□ 0.77
LIG3P49916 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIG3P49916 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIG3P49916 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIG3P49916 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIG3P49916 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
LIG3P49916 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIG3P49916 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIG3P49916 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
LIG3P49916 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.84■□□□□ 0.77
LIG3P49916 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
LIG3P49916 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIG3P49916 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.84■□□□□ 0.77
LIG3P49916 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LIG3P49916 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LIG3P49916 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
LIG3P49916 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIG3P49916 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIG3P49916 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIG3P49916 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIG3P49916 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIG3P49916 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIG3P49916 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.83■□□□□ 0.77
LIG3P49916 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIG3P49916 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
LIG3P49916 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
LIG3P49916 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.83■□□□□ 0.77
LIG3P49916 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.83■□□□□ 0.77
LIG3P49916 AC008550.1-201ENST00000511500 884 ntBASIC19.83■□□□□ 0.77
LIG3P49916 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
LIG3P49916 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.83■□□□□ 0.77
LIG3P49916 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
LIG3P49916 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LIG3P49916 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIG3P49916 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.83■□□□□ 0.76
LIG3P49916 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIG3P49916 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIG3P49916 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LIG3P49916 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.83■□□□□ 0.76
LIG3P49916 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
LIG3P49916 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.83■□□□□ 0.76
LIG3P49916 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIG3P49916 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
LIG3P49916 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIG3P49916 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIG3P49916 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LIG3P49916 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.82■□□□□ 0.76
LIG3P49916 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIG3P49916 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LIG3P49916 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIG3P49916 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
LIG3P49916 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIG3P49916 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.82■□□□□ 0.76
LIG3P49916 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
LIG3P49916 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
LIG3P49916 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.82■□□□□ 0.76
LIG3P49916 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LIG3P49916 RPS2P4-201ENST00000476944 856 ntBASIC19.82■□□□□ 0.76
LIG3P49916 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.82■□□□□ 0.76
LIG3P49916 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.82■□□□□ 0.76
LIG3P49916 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIG3P49916 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIG3P49916 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
LIG3P49916 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIG3P49916 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.82■□□□□ 0.76
LIG3P49916 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIG3P49916 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIG3P49916 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIG3P49916 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIG3P49916 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms