Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 COX20P2-201ENST00000452636 358 ntBASIC21.9■■□□□ 1.1
CTCFP49711 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC21.9■■□□□ 1.1
CTCFP49711 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CTCFP49711 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CTCFP49711 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC21.9■■□□□ 1.1
CTCFP49711 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
CTCFP49711 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC21.9■■□□□ 1.1
CTCFP49711 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CTCFP49711 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CTCFP49711 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CTCFP49711 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
CTCFP49711 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.1
CTCFP49711 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
CTCFP49711 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
CTCFP49711 PHGDH-210ENST00000641115 1638 ntBASIC21.89■■□□□ 1.09
CTCFP49711 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC21.89■■□□□ 1.09
CTCFP49711 METTL21AP1-201ENST00000438852 635 ntBASIC21.89■■□□□ 1.09
CTCFP49711 AL591424.1-201ENST00000442569 1213 ntBASIC21.89■■□□□ 1.09
CTCFP49711 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC21.89■■□□□ 1.09
CTCFP49711 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC21.89■■□□□ 1.09
CTCFP49711 AC145285.3-201ENST00000564603 959 ntBASIC21.89■■□□□ 1.09
CTCFP49711 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CTCFP49711 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC21.89■■□□□ 1.09
CTCFP49711 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CTCFP49711 AC116407.3-201ENST00000623905 1129 ntBASIC21.89■■□□□ 1.09
CTCFP49711 FAM215A-202ENST00000632077 792 ntBASIC21.89■■□□□ 1.09
CTCFP49711 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CTCFP49711 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CTCFP49711 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CTCFP49711 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.89■■□□□ 1.09
CTCFP49711 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CTCFP49711 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CTCFP49711 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.88■■□□□ 1.09
CTCFP49711 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CTCFP49711 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CTCFP49711 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CTCFP49711 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC21.88■■□□□ 1.09
CTCFP49711 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC21.88■■□□□ 1.09
CTCFP49711 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC21.88■■□□□ 1.09
CTCFP49711 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CTCFP49711 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC21.88■■□□□ 1.09
CTCFP49711 AL157888.1-201ENST00000631930 593 ntBASIC21.88■■□□□ 1.09
CTCFP49711 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC21.88■■□□□ 1.09
CTCFP49711 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CTCFP49711 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CTCFP49711 NSUN5P1-202ENST00000421140 1535 ntBASIC21.88■■□□□ 1.09
CTCFP49711 NSUN5P2-203ENST00000457352 1529 ntBASIC21.88■■□□□ 1.09
CTCFP49711 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CTCFP49711 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.88■■□□□ 1.09
CTCFP49711 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC21.88■■□□□ 1.09
CTCFP49711 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC21.88■■□□□ 1.09
CTCFP49711 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CTCFP49711 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CTCFP49711 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CTCFP49711 KRT8P11-201ENST00000409686 1436 ntBASIC21.88■■□□□ 1.09
CTCFP49711 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CTCFP49711 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
CTCFP49711 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC21.87■■□□□ 1.09
CTCFP49711 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CTCFP49711 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.87■■□□□ 1.09
CTCFP49711 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.87■■□□□ 1.09
CTCFP49711 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CTCFP49711 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CTCFP49711 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CTCFP49711 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CTCFP49711 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC21.87■■□□□ 1.09
CTCFP49711 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CTCFP49711 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
CTCFP49711 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CTCFP49711 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC21.87■■□□□ 1.09
CTCFP49711 EMD-201ENST00000369835 966 ntTSL 3 BASIC21.87■■□□□ 1.09
CTCFP49711 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
CTCFP49711 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC21.87■■□□□ 1.09
CTCFP49711 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC21.87■■□□□ 1.09
CTCFP49711 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC21.87■■□□□ 1.09
CTCFP49711 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC21.87■■□□□ 1.09
CTCFP49711 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC21.87■■□□□ 1.09
CTCFP49711 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC21.87■■□□□ 1.09
CTCFP49711 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC21.87■■□□□ 1.09
CTCFP49711 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
CTCFP49711 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CTCFP49711 CD37-204ENST00000535669 1674 ntTSL 2 BASIC21.87■■□□□ 1.09
CTCFP49711 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
CTCFP49711 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.87■■□□□ 1.09
CTCFP49711 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CTCFP49711 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC21.87■■□□□ 1.09
CTCFP49711 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
CTCFP49711 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
CTCFP49711 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.86■■□□□ 1.09
CTCFP49711 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CTCFP49711 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC21.86■■□□□ 1.09
CTCFP49711 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CTCFP49711 GRAMD4P1-201ENST00000435181 1110 ntBASIC21.86■■□□□ 1.09
CTCFP49711 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
CTCFP49711 NME1-207ENST00000480143 964 ntTSL 2 BASIC21.86■■□□□ 1.09
CTCFP49711 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC21.86■■□□□ 1.09
CTCFP49711 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
CTCFP49711 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC21.86■■□□□ 1.09
CTCFP49711 AL355877.3-201ENST00000622820 899 ntBASIC21.86■■□□□ 1.09
CTCFP49711 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms