Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.79■□□□□ 0.44
RFX3P48380 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC17.79■□□□□ 0.44
RFX3P48380 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFX3P48380 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.79■□□□□ 0.44
RFX3P48380 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFX3P48380 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
RFX3P48380 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RFX3P48380 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFX3P48380 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RFX3P48380 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
RFX3P48380 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC17.79■□□□□ 0.44
RFX3P48380 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RFX3P48380 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.79■□□□□ 0.44
RFX3P48380 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.79■□□□□ 0.44
RFX3P48380 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.79■□□□□ 0.44
RFX3P48380 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFX3P48380 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RFX3P48380 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFX3P48380 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
RFX3P48380 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
RFX3P48380 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.79■□□□□ 0.44
RFX3P48380 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFX3P48380 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFX3P48380 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.79■□□□□ 0.44
RFX3P48380 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFX3P48380 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RFX3P48380 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFX3P48380 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFX3P48380 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RFX3P48380 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.78■□□□□ 0.44
RFX3P48380 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.78■□□□□ 0.44
RFX3P48380 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.78■□□□□ 0.44
RFX3P48380 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
RFX3P48380 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
RFX3P48380 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
RFX3P48380 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.78■□□□□ 0.44
RFX3P48380 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RFX3P48380 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RFX3P48380 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.78■□□□□ 0.44
RFX3P48380 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
RFX3P48380 NIFKP9-201ENST00000419265 221 ntBASIC17.78■□□□□ 0.44
RFX3P48380 AL353807.1-201ENST00000427475 662 ntBASIC17.78■□□□□ 0.44
RFX3P48380 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
RFX3P48380 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RFX3P48380 UBE2SP1-201ENST00000450587 669 ntBASIC17.78■□□□□ 0.44
RFX3P48380 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC17.78■□□□□ 0.44
RFX3P48380 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RFX3P48380 FDX2-207ENST00000494368 584 ntTSL 4 BASIC17.78■□□□□ 0.44
RFX3P48380 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC17.78■□□□□ 0.44
RFX3P48380 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC17.78■□□□□ 0.44
RFX3P48380 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
RFX3P48380 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RFX3P48380 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
RFX3P48380 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RFX3P48380 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.78■□□□□ 0.44
RFX3P48380 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RFX3P48380 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
RFX3P48380 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RFX3P48380 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RFX3P48380 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
RFX3P48380 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.77■□□□□ 0.44
RFX3P48380 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.77■□□□□ 0.44
RFX3P48380 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
RFX3P48380 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
RFX3P48380 AL049812.1-201ENST00000432563 2267 ntBASIC17.77■□□□□ 0.44
RFX3P48380 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RFX3P48380 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.77■□□□□ 0.44
RFX3P48380 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
RFX3P48380 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RFX3P48380 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
RFX3P48380 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.77■□□□□ 0.44
RFX3P48380 RARRES2P10-201ENST00000564312 460 ntBASIC17.77■□□□□ 0.44
RFX3P48380 AF186192.3-201ENST00000583427 947 ntBASIC17.77■□□□□ 0.44
RFX3P48380 RPS15-203ENST00000586096 570 ntTSL 2 BASIC17.77■□□□□ 0.44
RFX3P48380 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC17.77■□□□□ 0.44
RFX3P48380 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.77■□□□□ 0.44
RFX3P48380 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RFX3P48380 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.77■□□□□ 0.44
RFX3P48380 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
RFX3P48380 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
RFX3P48380 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RFX3P48380 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.77■□□□□ 0.43
RFX3P48380 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
RFX3P48380 AC141586.3-201ENST00000562166 1838 ntBASIC17.77■□□□□ 0.43
RFX3P48380 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
RFX3P48380 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RFX3P48380 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RFX3P48380 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RFX3P48380 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RFX3P48380 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.76■□□□□ 0.43
RFX3P48380 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RFX3P48380 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.76■□□□□ 0.43
RFX3P48380 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
RFX3P48380 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RFX3P48380 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
RFX3P48380 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
RFX3P48380 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RFX3P48380 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
RFX3P48380 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
RFX3P48380 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms