Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.07■□□□□ 0.48
MSX2P35548 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.07■□□□□ 0.48
MSX2P35548 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.07■□□□□ 0.48
MSX2P35548 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSX2P35548 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
MSX2P35548 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSX2P35548 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSX2P35548 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MSX2P35548 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MSX2P35548 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
MSX2P35548 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSX2P35548 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.07■□□□□ 0.48
MSX2P35548 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MSX2P35548 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
MSX2P35548 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
MSX2P35548 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSX2P35548 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSX2P35548 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
MSX2P35548 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
MSX2P35548 ESPNP-201ENST00000270691 2015 ntBASIC18.06■□□□□ 0.48
MSX2P35548 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.06■□□□□ 0.48
MSX2P35548 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSX2P35548 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSX2P35548 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.06■□□□□ 0.48
MSX2P35548 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.06■□□□□ 0.48
MSX2P35548 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
MSX2P35548 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.06■□□□□ 0.48
MSX2P35548 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSX2P35548 GPX1P1-201ENST00000388829 606 ntBASIC18.06■□□□□ 0.48
MSX2P35548 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
MSX2P35548 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.06■□□□□ 0.48
MSX2P35548 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
MSX2P35548 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
MSX2P35548 BID-214ENST00000617586 542 ntTSL 5 BASIC18.06■□□□□ 0.48
MSX2P35548 AC083906.6-201ENST00000641366 219 ntBASIC18.06■□□□□ 0.48
MSX2P35548 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSX2P35548 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSX2P35548 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
MSX2P35548 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSX2P35548 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.06■□□□□ 0.48
MSX2P35548 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSX2P35548 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSX2P35548 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
MSX2P35548 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.06■□□□□ 0.48
MSX2P35548 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
MSX2P35548 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
MSX2P35548 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
MSX2P35548 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSX2P35548 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSX2P35548 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSX2P35548 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSX2P35548 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSX2P35548 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
MSX2P35548 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSX2P35548 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.05■□□□□ 0.48
MSX2P35548 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSX2P35548 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.05■□□□□ 0.48
MSX2P35548 KRT18P11-201ENST00000435214 1283 ntBASIC18.05■□□□□ 0.48
MSX2P35548 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.05■□□□□ 0.48
MSX2P35548 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.05■□□□□ 0.48
MSX2P35548 AC137761.2-201ENST00000561729 223 ntBASIC18.05■□□□□ 0.48
MSX2P35548 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC18.05■□□□□ 0.48
MSX2P35548 AC145350.3-201ENST00000569033 163 ntBASIC18.05■□□□□ 0.48
MSX2P35548 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSX2P35548 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
MSX2P35548 AC008694.1-202ENST00000636953 945 ntBASIC18.05■□□□□ 0.48
MSX2P35548 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
MSX2P35548 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSX2P35548 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSX2P35548 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
MSX2P35548 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.05■□□□□ 0.48
MSX2P35548 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
MSX2P35548 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.05■□□□□ 0.48
MSX2P35548 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
MSX2P35548 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MSX2P35548 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSX2P35548 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MSX2P35548 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MSX2P35548 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSX2P35548 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSX2P35548 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.04■□□□□ 0.48
MSX2P35548 ZNRF2P3-201ENST00000424200 374 ntBASIC18.04■□□□□ 0.48
MSX2P35548 AC093787.1-201ENST00000450396 207 ntBASIC18.04■□□□□ 0.48
MSX2P35548 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.04■□□□□ 0.48
MSX2P35548 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC18.04■□□□□ 0.48
MSX2P35548 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSX2P35548 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
MSX2P35548 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.04■□□□□ 0.48
MSX2P35548 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSX2P35548 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MSX2P35548 AC073592.3-201ENST00000625118 1834 ntBASIC18.04■□□□□ 0.48
MSX2P35548 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSX2P35548 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MSX2P35548 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MSX2P35548 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
MSX2P35548 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSX2P35548 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSX2P35548 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MSX2P35548 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.03■□□□□ 0.48
MSX2P35548 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms