Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL9A1P20849 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL9A1P20849 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.47■□□□□ 0.71
COL9A1P20849 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL9A1P20849 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL9A1P20849 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.46■□□□□ 0.71
COL9A1P20849 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
COL9A1P20849 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.46■□□□□ 0.71
COL9A1P20849 AC093525.10-201ENST00000625130 1569 ntBASIC19.46■□□□□ 0.71
COL9A1P20849 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
COL9A1P20849 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL9A1P20849 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL9A1P20849 GK-202ENST00000378941 458 ntTSL 3 BASIC19.46■□□□□ 0.71
COL9A1P20849 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL9A1P20849 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.46■□□□□ 0.71
COL9A1P20849 TSPY22P-201ENST00000427496 604 ntBASIC19.46■□□□□ 0.71
COL9A1P20849 HLA-V-201ENST00000429037 534 ntBASIC19.46■□□□□ 0.71
COL9A1P20849 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC19.46■□□□□ 0.71
COL9A1P20849 AC139887.3-201ENST00000568585 713 ntBASIC19.46■□□□□ 0.71
COL9A1P20849 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC19.46■□□□□ 0.71
COL9A1P20849 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL9A1P20849 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.46■□□□□ 0.71
COL9A1P20849 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL9A1P20849 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL9A1P20849 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL9A1P20849 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.46■□□□□ 0.71
COL9A1P20849 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.46■□□□□ 0.71
COL9A1P20849 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL9A1P20849 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL9A1P20849 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC19.46■□□□□ 0.71
COL9A1P20849 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.46■□□□□ 0.71
COL9A1P20849 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
COL9A1P20849 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.46■□□□□ 0.71
COL9A1P20849 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL9A1P20849 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL9A1P20849 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL9A1P20849 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL9A1P20849 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.45■□□□□ 0.7
COL9A1P20849 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.45■□□□□ 0.7
COL9A1P20849 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL9A1P20849 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL9A1P20849 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL9A1P20849 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC19.45■□□□□ 0.7
COL9A1P20849 SCARNA2-201ENST00000458748 420 ntBASIC19.45■□□□□ 0.7
COL9A1P20849 AC034232.1-201ENST00000506026 1064 ntBASIC19.45■□□□□ 0.7
COL9A1P20849 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC19.45■□□□□ 0.7
COL9A1P20849 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC19.45■□□□□ 0.7
COL9A1P20849 LITAF-211ENST00000572255 516 ntTSL 4 BASIC19.45■□□□□ 0.7
COL9A1P20849 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
COL9A1P20849 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL9A1P20849 AL356488.2-201ENST00000602755 427 ntBASIC19.45■□□□□ 0.7
COL9A1P20849 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC19.45■□□□□ 0.7
COL9A1P20849 AC027601.4-201ENST00000611259 610 ntBASIC19.45■□□□□ 0.7
COL9A1P20849 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL9A1P20849 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.45■□□□□ 0.7
COL9A1P20849 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.45■□□□□ 0.7
COL9A1P20849 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.45■□□□□ 0.7
COL9A1P20849 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.45■□□□□ 0.7
COL9A1P20849 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL9A1P20849 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
COL9A1P20849 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL9A1P20849 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.44■□□□□ 0.7
COL9A1P20849 AL162741.1-201ENST00000565563 1558 ntBASIC19.44■□□□□ 0.7
COL9A1P20849 AC009237.14-201ENST00000609975 1594 ntBASIC19.44■□□□□ 0.7
COL9A1P20849 AL162377.1-201ENST00000618844 1793 ntBASIC19.44■□□□□ 0.7
COL9A1P20849 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.44■□□□□ 0.7
COL9A1P20849 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
COL9A1P20849 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.44■□□□□ 0.7
COL9A1P20849 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL9A1P20849 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL9A1P20849 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL9A1P20849 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL9A1P20849 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL9A1P20849 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL9A1P20849 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC19.44■□□□□ 0.7
COL9A1P20849 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC19.44■□□□□ 0.7
COL9A1P20849 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL9A1P20849 AL136038.4-201ENST00000603606 1261 ntBASIC19.44■□□□□ 0.7
COL9A1P20849 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL9A1P20849 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL9A1P20849 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
COL9A1P20849 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL9A1P20849 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.44■□□□□ 0.7
COL9A1P20849 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.44■□□□□ 0.7
COL9A1P20849 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL9A1P20849 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL9A1P20849 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL9A1P20849 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
COL9A1P20849 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL9A1P20849 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL9A1P20849 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.43■□□□□ 0.7
COL9A1P20849 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL9A1P20849 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL9A1P20849 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19.43■□□□□ 0.7
COL9A1P20849 PON3-203ENST00000427422 894 ntTSL 3 BASIC19.43■□□□□ 0.7
COL9A1P20849 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC19.43■□□□□ 0.7
COL9A1P20849 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC19.43■□□□□ 0.7
COL9A1P20849 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.43■□□□□ 0.7
COL9A1P20849 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.43■□□□□ 0.7
COL9A1P20849 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms