Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 SNAI3-AS1-205ENST00000568633 2096 ntBASIC14.7□□□□□ -0.06
CXCL1P09341 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL1P09341 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC14.7□□□□□ -0.06
CXCL1P09341 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL1P09341 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL1P09341 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL1P09341 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL1P09341 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL1P09341 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL1P09341 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CXCL1P09341 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
CXCL1P09341 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC14.69□□□□□ -0.06
CXCL1P09341 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CXCL1P09341 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CXCL1P09341 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CXCL1P09341 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CXCL1P09341 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC14.69□□□□□ -0.06
CXCL1P09341 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
CXCL1P09341 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
CXCL1P09341 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CXCL1P09341 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
CXCL1P09341 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CXCL1P09341 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CXCL1P09341 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
CXCL1P09341 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
CXCL1P09341 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC14.69□□□□□ -0.06
CXCL1P09341 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC14.69□□□□□ -0.06
CXCL1P09341 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC14.69□□□□□ -0.06
CXCL1P09341 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC14.69□□□□□ -0.06
CXCL1P09341 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC14.69□□□□□ -0.06
CXCL1P09341 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC14.69□□□□□ -0.06
CXCL1P09341 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CXCL1P09341 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CXCL1P09341 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CXCL1P09341 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CXCL1P09341 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC14.69□□□□□ -0.06
CXCL1P09341 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CXCL1P09341 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC14.69□□□□□ -0.06
CXCL1P09341 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CXCL1P09341 ANO7L1-203ENST00000602586 1720 ntBASIC14.69□□□□□ -0.06
CXCL1P09341 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CXCL1P09341 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CXCL1P09341 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
CXCL1P09341 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CXCL1P09341 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 AL162741.1-201ENST00000565563 1558 ntBASIC14.68□□□□□ -0.06
CXCL1P09341 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 PCDH8P1-201ENST00000428983 2773 ntBASIC14.68□□□□□ -0.06
CXCL1P09341 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC14.68□□□□□ -0.06
CXCL1P09341 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC14.68□□□□□ -0.06
CXCL1P09341 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC14.68□□□□□ -0.06
CXCL1P09341 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC14.68□□□□□ -0.06
CXCL1P09341 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC14.68□□□□□ -0.06
CXCL1P09341 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CXCL1P09341 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC14.68□□□□□ -0.06
CXCL1P09341 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC14.68□□□□□ -0.06
CXCL1P09341 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC14.68□□□□□ -0.06
CXCL1P09341 SLC7A5P2-201ENST00000553010 536 ntBASIC14.68□□□□□ -0.06
CXCL1P09341 AP001160.3-201ENST00000601484 763 ntBASIC14.68□□□□□ -0.06
CXCL1P09341 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC14.68□□□□□ -0.06
CXCL1P09341 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC14.68□□□□□ -0.06
CXCL1P09341 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
CXCL1P09341 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
CXCL1P09341 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC14.68□□□□□ -0.06
CXCL1P09341 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC14.68□□□□□ -0.06
CXCL1P09341 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CXCL1P09341 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC14.67□□□□□ -0.06
CXCL1P09341 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CXCL1P09341 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CXCL1P09341 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CXCL1P09341 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CXCL1P09341 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
CXCL1P09341 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC14.67□□□□□ -0.06
CXCL1P09341 GNE-204ENST00000539208 2190 ntTSL 2 BASIC14.67□□□□□ -0.06
CXCL1P09341 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms