Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.49■□□□□ 0.55
HOXC4P09017 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HOXC4P09017 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.49■□□□□ 0.55
HOXC4P09017 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.49■□□□□ 0.55
HOXC4P09017 HYMAI.1-201ENST00000620949 238 ntBASIC18.49■□□□□ 0.55
HOXC4P09017 AC112497.1-201ENST00000624824 639 ntBASIC18.49■□□□□ 0.55
HOXC4P09017 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
HOXC4P09017 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HOXC4P09017 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HOXC4P09017 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
HOXC4P09017 AC073130.3-201ENST00000624389 2278 ntBASIC18.49■□□□□ 0.55
HOXC4P09017 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
HOXC4P09017 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.49■□□□□ 0.55
HOXC4P09017 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HOXC4P09017 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.49■□□□□ 0.55
HOXC4P09017 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HOXC4P09017 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
HOXC4P09017 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HOXC4P09017 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HOXC4P09017 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HOXC4P09017 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HOXC4P09017 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.48■□□□□ 0.55
HOXC4P09017 FAM86EP-206ENST00000510506 987 ntBASIC18.48■□□□□ 0.55
HOXC4P09017 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.48■□□□□ 0.55
HOXC4P09017 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HOXC4P09017 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HOXC4P09017 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HOXC4P09017 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HOXC4P09017 AFG3L1P-217ENST00000557444 2447 ntBASIC18.48■□□□□ 0.55
HOXC4P09017 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HOXC4P09017 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HOXC4P09017 AC008556.1-201ENST00000610908 2040 ntBASIC18.47■□□□□ 0.55
HOXC4P09017 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
HOXC4P09017 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HOXC4P09017 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HOXC4P09017 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HOXC4P09017 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.47■□□□□ 0.55
HOXC4P09017 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.47■□□□□ 0.55
HOXC4P09017 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HOXC4P09017 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HOXC4P09017 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HOXC4P09017 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HOXC4P09017 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HOXC4P09017 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.47■□□□□ 0.55
HOXC4P09017 RASA4DP-201ENST00000460726 1199 ntBASIC18.47■□□□□ 0.55
HOXC4P09017 SEC1P-202ENST00000473944 940 ntBASIC18.47■□□□□ 0.55
HOXC4P09017 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.47■□□□□ 0.55
HOXC4P09017 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
HOXC4P09017 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
HOXC4P09017 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.47■□□□□ 0.55
HOXC4P09017 AC068587.9-201ENST00000641814 219 ntBASIC18.47■□□□□ 0.55
HOXC4P09017 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
HOXC4P09017 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HOXC4P09017 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HOXC4P09017 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HOXC4P09017 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.47■□□□□ 0.55
HOXC4P09017 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HOXC4P09017 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
HOXC4P09017 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.47■□□□□ 0.55
HOXC4P09017 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC4P09017 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.46■□□□□ 0.55
HOXC4P09017 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC4P09017 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC4P09017 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC4P09017 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC4P09017 AC112907.2-201ENST00000448639 330 ntBASIC18.46■□□□□ 0.55
HOXC4P09017 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.46■□□□□ 0.55
HOXC4P09017 AL136038.3-201ENST00000561909 1096 ntBASIC18.46■□□□□ 0.55
HOXC4P09017 AC024243.1-201ENST00000609234 778 ntBASIC18.46■□□□□ 0.55
HOXC4P09017 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC4P09017 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC4P09017 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.46■□□□□ 0.55
HOXC4P09017 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
HOXC4P09017 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC4P09017 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC4P09017 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.46■□□□□ 0.55
HOXC4P09017 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC4P09017 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC4P09017 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.46■□□□□ 0.55
HOXC4P09017 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HOXC4P09017 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
HOXC4P09017 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HOXC4P09017 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HOXC4P09017 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.45■□□□□ 0.54
HOXC4P09017 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HOXC4P09017 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HOXC4P09017 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HOXC4P09017 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HOXC4P09017 SPDYE15P-201ENST00000424157 909 ntBASIC18.45■□□□□ 0.54
HOXC4P09017 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.45■□□□□ 0.54
HOXC4P09017 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC18.45■□□□□ 0.54
HOXC4P09017 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.45■□□□□ 0.54
HOXC4P09017 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC18.45■□□□□ 0.54
HOXC4P09017 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HOXC4P09017 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.45■□□□□ 0.54
HOXC4P09017 AL358472.4-201ENST00000633140 710 ntBASIC18.45■□□□□ 0.54
HOXC4P09017 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
HOXC4P09017 AP000550.4-202ENST00000639755 178 ntBASIC18.45■□□□□ 0.54
HOXC4P09017 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.45■□□□□ 0.54
HOXC4P09017 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms