Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.28■□□□□ 0.52
LDLRP01130 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.28■□□□□ 0.52
LDLRP01130 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.28■□□□□ 0.52
LDLRP01130 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.28■□□□□ 0.52
LDLRP01130 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
LDLRP01130 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 AC018470.1-201ENST00000624790 3129 ntBASIC18.28■□□□□ 0.52
LDLRP01130 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
LDLRP01130 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
LDLRP01130 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
LDLRP01130 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.28■□□□□ 0.52
LDLRP01130 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDLRP01130 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDLRP01130 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDLRP01130 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDLRP01130 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
LDLRP01130 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
LDLRP01130 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDLRP01130 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LDLRP01130 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDLRP01130 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDLRP01130 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.27■□□□□ 0.52
LDLRP01130 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LDLRP01130 KRT8P20-201ENST00000423953 1409 ntBASIC18.27■□□□□ 0.52
LDLRP01130 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDLRP01130 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.27■□□□□ 0.52
LDLRP01130 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
LDLRP01130 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LDLRP01130 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LDLRP01130 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.27■□□□□ 0.52
LDLRP01130 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.27■□□□□ 0.52
LDLRP01130 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LDLRP01130 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.27■□□□□ 0.52
LDLRP01130 PRKY-204ENST00000533551 1019 ntBASIC18.27■□□□□ 0.52
LDLRP01130 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.27■□□□□ 0.52
LDLRP01130 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.27■□□□□ 0.52
LDLRP01130 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.27■□□□□ 0.52
LDLRP01130 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.27■□□□□ 0.52
LDLRP01130 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
LDLRP01130 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LDLRP01130 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LDLRP01130 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
LDLRP01130 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LDLRP01130 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
LDLRP01130 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.27■□□□□ 0.51
LDLRP01130 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
LDLRP01130 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
LDLRP01130 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
LDLRP01130 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LDLRP01130 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LDLRP01130 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDLRP01130 AC090164.3-201ENST00000610780 2143 ntBASIC18.26■□□□□ 0.51
LDLRP01130 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDLRP01130 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LDLRP01130 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LDLRP01130 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.26■□□□□ 0.51
LDLRP01130 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDLRP01130 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.26■□□□□ 0.51
LDLRP01130 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LDLRP01130 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDLRP01130 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.26■□□□□ 0.51
LDLRP01130 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.26■□□□□ 0.51
LDLRP01130 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
LDLRP01130 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LDLRP01130 RARRES2P10-201ENST00000564312 460 ntBASIC18.26■□□□□ 0.51
LDLRP01130 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.26■□□□□ 0.51
LDLRP01130 AL353708.3-201ENST00000610272 989 ntBASIC18.26■□□□□ 0.51
LDLRP01130 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
LDLRP01130 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LDLRP01130 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
LDLRP01130 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
LDLRP01130 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDLRP01130 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDLRP01130 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LDLRP01130 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDLRP01130 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
LDLRP01130 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LDLRP01130 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.26■□□□□ 0.51
LDLRP01130 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LDLRP01130 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.26■□□□□ 0.51
LDLRP01130 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
LDLRP01130 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms