Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN9O95484 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN9O95484 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.32■□□□□ 0.52
CLDN9O95484 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
CLDN9O95484 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.32■□□□□ 0.52
CLDN9O95484 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CLDN9O95484 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.32■□□□□ 0.52
CLDN9O95484 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.32■□□□□ 0.52
CLDN9O95484 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN9O95484 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN9O95484 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CLDN9O95484 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN9O95484 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.32■□□□□ 0.52
CLDN9O95484 KRT16P1-201ENST00000399124 1418 ntBASIC18.32■□□□□ 0.52
CLDN9O95484 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN9O95484 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN9O95484 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN9O95484 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN9O95484 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN9O95484 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN9O95484 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN9O95484 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CLDN9O95484 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN9O95484 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN9O95484 PRSS44-201ENST00000515154 1146 ntBASIC18.31■□□□□ 0.52
CLDN9O95484 RARRES2P10-201ENST00000564312 460 ntBASIC18.31■□□□□ 0.52
CLDN9O95484 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.31■□□□□ 0.52
CLDN9O95484 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN9O95484 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN9O95484 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN9O95484 WIZP1-201ENST00000531444 2299 ntBASIC18.31■□□□□ 0.52
CLDN9O95484 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.31■□□□□ 0.52
CLDN9O95484 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN9O95484 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.31■□□□□ 0.52
CLDN9O95484 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.31■□□□□ 0.52
CLDN9O95484 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN9O95484 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CLDN9O95484 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.31■□□□□ 0.52
CLDN9O95484 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN9O95484 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CLDN9O95484 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.31■□□□□ 0.52
CLDN9O95484 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN9O95484 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN9O95484 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.3■□□□□ 0.52
CLDN9O95484 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN9O95484 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN9O95484 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN9O95484 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN9O95484 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN9O95484 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN9O95484 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN9O95484 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN9O95484 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN9O95484 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN9O95484 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN9O95484 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN9O95484 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.3■□□□□ 0.52
CLDN9O95484 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN9O95484 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CLDN9O95484 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.3■□□□□ 0.52
CLDN9O95484 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
CLDN9O95484 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.3■□□□□ 0.52
CLDN9O95484 AF186192.3-201ENST00000583427 947 ntBASIC18.3■□□□□ 0.52
CLDN9O95484 FAM197Y4-202ENST00000622692 608 ntBASIC18.3■□□□□ 0.52
CLDN9O95484 CR392000.1-201ENST00000624770 1228 ntBASIC18.3■□□□□ 0.52
CLDN9O95484 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.3■□□□□ 0.52
CLDN9O95484 AL031985.4-201ENST00000642138 673 ntBASIC18.3■□□□□ 0.52
CLDN9O95484 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN9O95484 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN9O95484 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.3■□□□□ 0.52
CLDN9O95484 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN9O95484 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.3■□□□□ 0.52
CLDN9O95484 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
CLDN9O95484 RCC2P6-201ENST00000526625 1557 ntBASIC18.3■□□□□ 0.52
CLDN9O95484 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN9O95484 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CLDN9O95484 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN9O95484 ANO7L1-203ENST00000602586 1720 ntBASIC18.29■□□□□ 0.52
CLDN9O95484 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN9O95484 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN9O95484 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN9O95484 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.29■□□□□ 0.52
CLDN9O95484 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN9O95484 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CLDN9O95484 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN9O95484 KRT18P29-201ENST00000397031 1267 ntBASIC18.29■□□□□ 0.52
CLDN9O95484 AC004951.3-201ENST00000418645 1148 ntBASIC18.29■□□□□ 0.52
CLDN9O95484 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CLDN9O95484 AC091390.4-202ENST00000476426 537 ntBASIC18.29■□□□□ 0.52
CLDN9O95484 AC026271.3-201ENST00000571884 352 ntBASIC18.29■□□□□ 0.52
CLDN9O95484 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.29■□□□□ 0.52
CLDN9O95484 AC073195.1-201ENST00000607241 877 ntBASIC18.29■□□□□ 0.52
CLDN9O95484 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.29■□□□□ 0.52
CLDN9O95484 ITM2C-210ENST00000620962 501 ntBASIC18.29■□□□□ 0.52
CLDN9O95484 AL359736.2-201ENST00000621992 437 ntBASIC18.29■□□□□ 0.52
CLDN9O95484 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN9O95484 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN9O95484 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.29■□□□□ 0.52
CLDN9O95484 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLDN9O95484 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms