Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC28.41■■■□□ 2.14
RAPGEF3O95398 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
RAPGEF3O95398 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
RAPGEF3O95398 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC28.4■■■□□ 2.14
RAPGEF3O95398 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC28.4■■■□□ 2.14
RAPGEF3O95398 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
RAPGEF3O95398 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC28.4■■■□□ 2.14
RAPGEF3O95398 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
RAPGEF3O95398 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC28.4■■■□□ 2.14
RAPGEF3O95398 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC28.4■■■□□ 2.14
RAPGEF3O95398 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC28.4■■■□□ 2.14
RAPGEF3O95398 AC140113.2-201ENST00000604370 208 ntBASIC28.4■■■□□ 2.14
RAPGEF3O95398 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
RAPGEF3O95398 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
RAPGEF3O95398 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
RAPGEF3O95398 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC28.4■■■□□ 2.14
RAPGEF3O95398 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
RAPGEF3O95398 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC28.4■■■□□ 2.14
RAPGEF3O95398 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC28.4■■■□□ 2.14
RAPGEF3O95398 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
RAPGEF3O95398 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC28.4■■■□□ 2.14
RAPGEF3O95398 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC28.39■■■□□ 2.14
RAPGEF3O95398 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
RAPGEF3O95398 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC28.39■■■□□ 2.14
RAPGEF3O95398 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC28.39■■■□□ 2.14
RAPGEF3O95398 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC28.39■■■□□ 2.14
RAPGEF3O95398 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
RAPGEF3O95398 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
RAPGEF3O95398 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC28.39■■■□□ 2.14
RAPGEF3O95398 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
RAPGEF3O95398 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
RAPGEF3O95398 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
RAPGEF3O95398 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC28.39■■■□□ 2.14
RAPGEF3O95398 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC28.39■■■□□ 2.14
RAPGEF3O95398 KRT8P3-201ENST00000519669 1449 ntBASIC28.39■■■□□ 2.14
RAPGEF3O95398 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
RAPGEF3O95398 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC28.39■■■□□ 2.14
RAPGEF3O95398 BNIP3P18-201ENST00000593976 575 ntBASIC28.39■■■□□ 2.14
RAPGEF3O95398 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
RAPGEF3O95398 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC28.39■■■□□ 2.14
RAPGEF3O95398 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC28.39■■■□□ 2.14
RAPGEF3O95398 FAM215A-202ENST00000632077 792 ntBASIC28.39■■■□□ 2.14
RAPGEF3O95398 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC28.39■■■□□ 2.13
RAPGEF3O95398 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC28.39■■■□□ 2.13
RAPGEF3O95398 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
RAPGEF3O95398 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC28.38■■■□□ 2.13
RAPGEF3O95398 ZNF259P1-201ENST00000407656 1365 ntBASIC28.38■■■□□ 2.13
RAPGEF3O95398 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
RAPGEF3O95398 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
RAPGEF3O95398 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
RAPGEF3O95398 HNRNPDP1-201ENST00000439535 754 ntBASIC28.38■■■□□ 2.13
RAPGEF3O95398 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC28.38■■■□□ 2.13
RAPGEF3O95398 GUSBP12-201ENST00000513727 720 ntBASIC28.38■■■□□ 2.13
RAPGEF3O95398 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC28.38■■■□□ 2.13
RAPGEF3O95398 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC28.38■■■□□ 2.13
RAPGEF3O95398 GAS2L1P1-201ENST00000420145 1480 ntBASIC28.38■■■□□ 2.13
RAPGEF3O95398 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC28.38■■■□□ 2.13
RAPGEF3O95398 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
RAPGEF3O95398 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
RAPGEF3O95398 MINOS1P3-201ENST00000457048 203 ntBASIC28.37■■■□□ 2.13
RAPGEF3O95398 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC28.37■■■□□ 2.13
RAPGEF3O95398 AP001160.2-201ENST00000596071 487 ntBASIC28.37■■■□□ 2.13
RAPGEF3O95398 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
RAPGEF3O95398 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC28.37■■■□□ 2.13
RAPGEF3O95398 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
RAPGEF3O95398 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC28.37■■■□□ 2.13
RAPGEF3O95398 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
RAPGEF3O95398 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC28.37■■■□□ 2.13
RAPGEF3O95398 ZNF815P-204ENST00000434898 1737 ntBASIC28.37■■■□□ 2.13
RAPGEF3O95398 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC28.37■■■□□ 2.13
RAPGEF3O95398 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC28.37■■■□□ 2.13
RAPGEF3O95398 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
RAPGEF3O95398 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC28.36■■■□□ 2.13
RAPGEF3O95398 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
RAPGEF3O95398 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC28.36■■■□□ 2.13
RAPGEF3O95398 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC28.36■■■□□ 2.13
RAPGEF3O95398 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
RAPGEF3O95398 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC28.36■■■□□ 2.13
RAPGEF3O95398 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
RAPGEF3O95398 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
RAPGEF3O95398 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC28.36■■■□□ 2.13
RAPGEF3O95398 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
RAPGEF3O95398 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC28.36■■■□□ 2.13
RAPGEF3O95398 MIR5100-201ENST00000579544 119 ntBASIC28.36■■■□□ 2.13
RAPGEF3O95398 TEN1-204ENST00000588202 862 ntTSL 3 BASIC28.36■■■□□ 2.13
RAPGEF3O95398 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC28.36■■■□□ 2.13
RAPGEF3O95398 AL591684.3-201ENST00000605187 298 ntBASIC28.36■■■□□ 2.13
RAPGEF3O95398 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC28.36■■■□□ 2.13
RAPGEF3O95398 AC116407.3-201ENST00000623905 1129 ntBASIC28.36■■■□□ 2.13
RAPGEF3O95398 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
RAPGEF3O95398 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC28.36■■■□□ 2.13
RAPGEF3O95398 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC28.36■■■□□ 2.13
RAPGEF3O95398 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC28.35■■■□□ 2.13
RAPGEF3O95398 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
RAPGEF3O95398 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
RAPGEF3O95398 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC28.35■■■□□ 2.13
RAPGEF3O95398 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
RAPGEF3O95398 AC008608.2-201ENST00000606089 416 ntBASIC28.35■■■□□ 2.13
RAPGEF3O95398 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
RAPGEF3O95398 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC28.35■■■□□ 2.13
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms